View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6356_high_2 (Length: 417)
Name: NF6356_high_2
Description: NF6356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6356_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Complemental strand, 24936267 - 24935888
Alignment:
| Q |
17 |
agaaataacttacacataaccgcttatatataagcctttatgctataagcacttcattaagttatccaaagaggacttaaaccattccaaactgcatgtg |
116 |
Q |
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| T |
24936267 |
agaaataacttatacataaccacttatatataagcctttatgctataagcacttcattaagttatccaaagaggacttaaaccattccaaactgcatgtg |
24936168 |
T |
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| Q |
117 |
tgataagtcttaaaaacagtgtgtaagatatcatatcttttattttaacaggttttcaaataaaatnnnnnnngatggacacagaaagatcaatagatga |
216 |
Q |
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| T |
24936167 |
tgataagtcttaaaaacagtgtgtaagatatcatatcttttattttaacaggttttcaaataaaaaaaaaaaagatggacacagaaagatcaatagatga |
24936068 |
T |
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| Q |
217 |
ccaattctccaagctacatccttctttgccagaaaacacaagaattggaatagttggtgctggtccaagtggcttatcagctgcttatgcattaaccagg |
316 |
Q |
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| T |
24936067 |
ccaattctccaagctacatccttctttgccagaaaacacaagagttggaatagttggtgctggtccaagtggcttatcagctgcttatgcattaaccagg |
24935968 |
T |
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| Q |
317 |
cttggttataagaatgttacagttttggagaaacatcacactgttggtggcatgtgcgaatcagttgaaattgaaggtat |
396 |
Q |
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| T |
24935967 |
cttggttataagaatgttacagttttggagaaacatcacacagttggtggcatgtgtgaatcagttgaaattgaaggtat |
24935888 |
T |
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Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 200 - 395
Target Start/End: Complemental strand, 42131450 - 42131255
Alignment:
| Q |
200 |
gaaagatcaatagatgaccaattctccaagctacatccttctttgccagaaaacacaagaattggaatagttggtgctggtccaagtggcttatcagctg |
299 |
Q |
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| T |
42131450 |
gaaagatcaatagaggagcaattctccaagctacatccttccttgccattaaacaccagaattggaatagtaggtgccggtccaagtggcatatcagctg |
42131351 |
T |
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| Q |
300 |
cttatgcattaaccaggcttggttataagaatgttacagttttggagaaacatcacactgttggtggcatgtgcgaatcagttgaaattgaaggta |
395 |
Q |
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| T |
42131350 |
cttatgcactatcaaggcttggttataataatatcactgtcttggagaaacaccatgcagttggtggcatgtgtgaatcagtagaaattgaaggta |
42131255 |
T |
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