View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6356_low_3 (Length: 342)
Name: NF6356_low_3
Description: NF6356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6356_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 324
Target Start/End: Complemental strand, 576857 - 576541
Alignment:
| Q |
11 |
cagagagggctatgaaaagtttgtagataaaatgtccagcatgcaacatattattgtgttgttcatgaagcttaatagttgcattcgagactgagaatgt |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
576857 |
cagaaagggctatgaaaagtttgtagataaaatgtccagcatgcaacatattattgtgttgttcatgaagcttaatagttgcattcgagactgagaatgt |
576758 |
T |
|
| Q |
111 |
gtaaaataaggaataatcattcatgagatcaccgtcatatgtgaacgataccagttcatttgaaaggattcttataaggccatgatgataatttagatct |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
576757 |
gtaaaataaggaataatcattcatgagatcaccgtcatatgtgaaagataccagttcatttgaaaggattcttataaggccatgatgataatttagattt |
576658 |
T |
|
| Q |
211 |
tccactgcagtaatatcattgacatcattacttaattcctcagcaagttc---ttctacttcttcctcgttgtcatggtgatcattttcatcatcatggt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
576657 |
tccactgcagtaatatcattgacatcattatttaattcctcagcaagttcttcttctacttcttcctcgttgtcgtggtgatcatcttcatcatcatggt |
576558 |
T |
|
| Q |
308 |
ctttccaatccctaatg |
324 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
576557 |
ctttccaatccctaatg |
576541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University