View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6356_low_5 (Length: 244)

Name: NF6356_low_5
Description: NF6356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6356_low_5
NF6356_low_5
[»] chr8 (5 HSPs)
chr8 (19-229)||(7258106-7258317)
chr8 (122-184)||(29510588-29510650)
chr8 (193-239)||(43844670-43844716)
chr8 (111-176)||(12783256-12783321)
chr8 (137-185)||(41291638-41291686)
[»] chr3 (2 HSPs)
chr3 (116-184)||(44437995-44438063)
chr3 (128-184)||(36232789-36232845)
[»] chr6 (1 HSPs)
chr6 (195-239)||(34703749-34703793)
[»] chr2 (1 HSPs)
chr2 (195-239)||(27001707-27001751)
[»] chr1 (1 HSPs)
chr1 (196-239)||(34814064-34814107)


Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 7258106 - 7258317
Alignment:
Q  19 gacatgacgtatttgtgggttgttatattcaaaatgatgtagattgatgacatatatatattttaacgaaaatgctaaccaatgtctctg-agtactggt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||| || ||| ||    
T  7258106 gacatgacgtatttgtgggttgttatattcaaaatgatgtagattgatgacatatatatattttaaggaaaatgctaacatgtgtctctgaaggactagt 7258205  T
Q  118 taaagaaataagtataatgagaatttcttagaacttatgtaatcaagtatttaaaagtgcagaaaatactctcttcaatactccctccgtcccaatttaa 217  Q
    ||| ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||| ||||||||    
T  7258206 taaggaaataagtataataggaatttcttggaacttatgtaatcaagtatttaaaagtggagaaaatactgacttcaatactccctccgtcgcaatttaa 7258305  T
Q  218 gtgagttttttg 229  Q
     |||||| ||||    
T  7258306 ctgagttctttg 7258317  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 29510588 - 29510650
Alignment:
Q  122 gaaataagtataatgagaatttcttagaacttatgtaatcaagtatttaaaagtgcagaaaat 184  Q
    |||| ||||||| | | |||||||| |||||| ||||||||| |||||||||||| |||||||    
T  29510588 gaaacaagtatagtaaaaatttcttggaacttgtgtaatcaaatatttaaaagtgtagaaaat 29510650  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 43844670 - 43844716
Alignment:
Q  193 caatactccctccgtcccaatttaagtgagttttttgttcatctcac 239  Q
    ||||||||||||||||||| ||||| ||||||||||| |||| ||||    
T  43844670 caatactccctccgtcccattttaattgagttttttgatcatttcac 43844716  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 12783256 - 12783321
Alignment:
Q  111 tactggttaaagaaataagtataatgagaatttcttagaacttatgtaatcaagtatttaaaagtg 176  Q
    |||| |||||||||| || |||| | | ||| |||||||| |||||||||||| ||||||||||||    
T  12783256 tactagttaaagaaacaattatattcataatctcttagaatttatgtaatcaaatatttaaaagtg 12783321  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 41291638 - 41291686
Alignment:
Q  137 agaatttcttagaacttatgtaatcaagtatttaaaagtgcagaaaata 185  Q
    ||||||||||| ||||| |||||||||||||| |||| || ||||||||    
T  41291638 agaatttcttaaaacttgtgtaatcaagtattaaaaaatgtagaaaata 41291686  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 44438063 - 44437995
Alignment:
Q  116 gttaaagaaataagtataatgagaatttcttagaacttatgtaatcaagtatttaaaagtgcagaaaat 184  Q
    ||||| |||| ||||||| | |||||||||| |||||| ||||||||| |||||||||||| |||||||    
T  44438063 gttaaggaaacaagtatagtaagaatttcttggaacttgtgtaatcaaatatttaaaagtgtagaaaat 44437995  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 36232789 - 36232845
Alignment:
Q  128 agtataatgagaatttcttagaacttatgtaatcaagtatttaaaagtgcagaaaat 184  Q
    |||||||| ||||||||||| ||||| | |||||||||||||||||||  |||||||    
T  36232789 agtataataagaatttcttaaaacttgtttaatcaagtatttaaaagtatagaaaat 36232845  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 34703793 - 34703749
Alignment:
Q  195 atactccctccgtcccaatttaagtgagttttttgttcatctcac 239  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||    
T  34703793 atactccctccgtcccaatttaagtgagcattttgttcatttcac 34703749  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 27001751 - 27001707
Alignment:
Q  195 atactccctccgtcccaatttaagtgagttttttgttcatctcac 239  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||    
T  27001751 atactccctccgtcccaatttaagtgagcattttgttcatttcac 27001707  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 34814107 - 34814064
Alignment:
Q  196 tactccctccgtcccaatttaagtgagttttttgttcatctcac 239  Q
    |||||||||||||||||||||||||| ||||||| |||| ||||    
T  34814107 tactccctccgtcccaatttaagtgaattttttgctcatttcac 34814064  T

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