View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6357_high_2 (Length: 272)

Name: NF6357_high_2
Description: NF6357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6357_high_2
NF6357_high_2
[»] chr3 (2 HSPs)
chr3 (132-267)||(12404829-12404964)
chr3 (18-93)||(12404685-12404760)
[»] chr7 (2 HSPs)
chr7 (8-78)||(18037851-18037921)
chr7 (65-93)||(24937858-24937886)
[»] chr1 (1 HSPs)
chr1 (6-98)||(13643596-13643688)
[»] chr8 (2 HSPs)
chr8 (6-48)||(34085205-34085247)
chr8 (6-87)||(3137433-3137514)
[»] chr6 (4 HSPs)
chr6 (60-93)||(9213095-9213128)
chr6 (27-88)||(10008225-10008286)
chr6 (6-71)||(33607750-33607815)
chr6 (65-93)||(28048799-28048827)
[»] chr5 (2 HSPs)
chr5 (208-261)||(38727936-38727989)
chr5 (65-93)||(14152530-14152558)
[»] chr4 (1 HSPs)
chr4 (65-93)||(37461824-37461852)
[»] chr2 (1 HSPs)
chr2 (14-94)||(33635539-33635619)


Alignment Details
Target: chr3 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 132 - 267
Target Start/End: Original strand, 12404829 - 12404964
Alignment:
Q  132 tgtagatattgattaattgattgcttgttataggtatccatcacatggaagaagagaagctagagagtgtggaattccatgggaaaggataagagcacct 231  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12404829 tgtagatattggttaattgattgcttgttataggtatccttcacatggaagaagagaagctagagagtgtggaattccatgggaaaggataagagcacct 12404928  T
Q  232 cctgttgatatctctccacatgatcttcatctctct 267  Q
    |||||||||||||||||||||||||||||| |||||    
T  12404929 cctgttgatatctctccacatgatcttcatatctct 12404964  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 12404685 - 12404760
Alignment:
Q  18 cataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattacaccactttttataaaa 93  Q
    ||||||||||  |||||| |||||||||||||| | ||||| ||| |||||||  ||||||| |||||||||||||    
T  12404685 cataaataaactttttgtcttgaaagtataaattggttcttttgagcaagtaacgattacactactttttataaaa 12404760  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 18037851 - 18037921
Alignment:
Q  8 ttaagaaattcataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattaca 78  Q
    ||||||||| |||||||||||||||||| |||||| ||||||| | | ||| ||||||| |||||||||||    
T  18037851 ttaagaaatccataaataaaaattttgttttgaaaatataaattgttacttttgatcaaataataattaca 18037921  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 24937886 - 24937858
Alignment:
Q  65 aagtaataattacaccactttttataaaa 93  Q
    |||||||||||||||||||||||||||||    
T  24937886 aagtaataattacaccactttttataaaa 24937858  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 13643688 - 13643596
Alignment:
Q  6 ggttaagaaattcataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattacaccactttttataaaatttta 98  Q
    ||||||| ||||||||| ||||||  |||| |||||| |||||| || | ||| |||  || |||| |||||||||||||| |||||||||||    
T  13643688 ggttaaggaattcataagtaaaaaaattgtcttgaaaatataaaccgttacttttgacaaattaattattacaccacttttaataaaatttta 13643596  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 34085205 - 34085247
Alignment:
Q  6 ggttaagaaattcataaataaaaattttgtgttgaaagtataa 48  Q
    |||||||||||||||||||||||| ||||| |||||| |||||    
T  34085205 ggttaagaaattcataaataaaaaatttgttttgaaaatataa 34085247  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 3137514 - 3137433
Alignment:
Q  6 ggttaagaaattcataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattacaccacttttt 87  Q
    |||||||||||||| ||||| ||||||||| |||||| | |||   | | ||| |||||||||||| ||||||| |||||||    
T  3137514 ggttaagaaattcagaaatagaaattttgtcttgaaaatgtaagatgttacttttgatcaagtaattattacacaacttttt 3137433  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 9213095 - 9213128
Alignment:
Q  60 tgatcaagtaataattacaccactttttataaaa 93  Q
    |||||||||||||||||||| |||||||||||||    
T  9213095 tgatcaagtaataattacactactttttataaaa 9213128  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 10008286 - 10008225
Alignment:
Q  27 aaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattacaccacttttta 88  Q
    ||||||||| || ||| ||||||  | | ||| |||||||||||||||||||||||||||||    
T  10008286 aaattttgtcttaaaaatataaacggttacttttgatcaagtaataattacaccacttttta 10008225  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 33607750 - 33607815
Alignment:
Q  6 ggttaagaaattcataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaat 71  Q
    |||||||||||||||||||||||||| |||  | ||| ||||||  | | ||||||||||||||||    
T  33607750 ggttaagaaattcataaataaaaattatgtcattaaaatataaagtgttacttctgatcaagtaat 33607815  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 28048799 - 28048827
Alignment:
Q  65 aagtaataattacaccactttttataaaa 93  Q
    |||||||||||||||||||||||||||||    
T  28048799 aagtaataattacaccactttttataaaa 28048827  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 38727989 - 38727936
Alignment:
Q  208 ccatgggaaaggataagagcacctcctgttgatatctctccacatgatcttcat 261  Q
    |||||||||||| |||||||||| ||||| ||||   |||||||||||||||||    
T  38727989 ccatgggaaaggctaagagcaccgcctgtcgatacgcctccacatgatcttcat 38727936  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 14152530 - 14152558
Alignment:
Q  65 aagtaataattacaccactttttataaaa 93  Q
    |||||||||||||||||||||||||||||    
T  14152530 aagtaataattacaccactttttataaaa 14152558  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 37461824 - 37461852
Alignment:
Q  65 aagtaataattacaccactttttataaaa 93  Q
    |||||||||||||||||||||||||||||    
T  37461824 aagtaataattacaccactttttataaaa 37461852  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 33635619 - 33635539
Alignment:
Q  14 aattcataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattacaccactttttataaaat 94  Q
    |||| |||||| |||| ||||| |||||| |||||||     ||| |||| |||||||||||||| |||||||||||||||    
T  33635619 aatttataaatgaaaaatttgtcttgaaaatataaattttgacttttgattaagtaataattacatcactttttataaaat 33635539  T

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