View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6357_low_3 (Length: 323)

Name: NF6357_low_3
Description: NF6357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6357_low_3
NF6357_low_3
[»] chr3 (2 HSPs)
chr3 (21-309)||(12404161-12404459)
chr3 (122-207)||(3041606-3041691)
[»] chr2 (2 HSPs)
chr2 (120-177)||(42467885-42467942)
chr2 (143-188)||(37494733-37494778)
[»] chr1 (4 HSPs)
chr1 (122-177)||(19808751-19808806)
chr1 (145-188)||(1327620-1327663)
chr1 (126-188)||(4364244-4364306)
chr1 (80-116)||(19808796-19808832)
[»] chr5 (1 HSPs)
chr5 (122-190)||(4483922-4483990)
[»] chr8 (3 HSPs)
chr8 (160-193)||(32817217-32817250)
chr8 (122-176)||(32409870-32409924)
chr8 (83-117)||(44961976-44962010)
[»] chr4 (2 HSPs)
chr4 (122-184)||(5078927-5078989)
chr4 (147-209)||(6986768-6986830)
[»] chr6 (1 HSPs)
chr6 (135-188)||(7712351-7712404)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 21 - 309
Target Start/End: Original strand, 12404161 - 12404459
Alignment:
Q  21 catacaaatttgacaacaaattagtcaattaacgtagttcaaataagtggttaacacaatttagtggatggataatgaatataacaaggtgtcacagtta 120  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12404161 catacaaatttgacaacaaattagacgattaacgtagttcaaataagtggttaacacaatttagtggatggataatgaatataacaaggtgtcacagtta 12404260  T
Q  121 gcatccactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaatttgatttccaatttgtgtcaaaatgatacaacatt 220  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12404261 gtatccactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaatttgatttccaatttgtgtcaaaatgatacaacatt 12404360  T
Q  221 ttc----------aatgaatagtgttttctcacatgttacaattttggtgttggtgttgtagaatggtcatcttggtttcctgttatcttgctatgatg 309  Q
    |||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12404361 ttcaatggaatttaatgaatagtgttttctcacatgttacaattttggtgttggtgttgtagaatggtcatcttggtttcctgttatcttgctatgatg 12404459  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 207
Target Start/End: Original strand, 3041606 - 3041691
Alignment:
Q  122 catccactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaatttgatttccaatttgtgtcaaa 207  Q
    |||||||||||  ||||| ||||||||| ||||| || ||||||||| || ||||| || |  |||| |||| |||||||||||||    
T  3041606 catccactaaatgtaattaaccacatatgtgaacggtgttaaccatccaagttgttgtcgatttttgttttcaaatttgtgtcaaa 3041691  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 42467885 - 42467942
Alignment:
Q  120 agcatccactaaacataatttaccacatatttgaactgtattaaccatctaaattgtt 177  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||    
T  42467885 agcatccactaaacataattaaccacatatttgaactgcattaaccatctgaattgtt 42467942  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 37494778 - 37494733
Alignment:
Q  143 cacatatttgaactgtattaaccatctaaattgttatcaaaatttg 188  Q
    ||||||||||||||| |||||||||| ||||||||||| |||||||    
T  37494778 cacatatttgaactgcattaaccatccaaattgttatcgaaatttg 37494733  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 19808806 - 19808751
Alignment:
Q  122 catccactaaacataatttaccacatatttgaactgtattaaccatctaaattgtt 177  Q
    |||||||||||| ||||||||||||||||||||| || ||||||||| ||||||||    
T  19808806 catccactaaacgtaatttaccacatatttgaacggtgttaaccatccaaattgtt 19808751  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 1327663 - 1327620
Alignment:
Q  145 catatttgaactgtattaaccatctaaattgttatcaaaatttg 188  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||    
T  1327663 catagttgaactgtgttaaccatctaatttgttatcaaaatttg 1327620  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 4364306 - 4364244
Alignment:
Q  126 cactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaatttg 188  Q
    |||| ||||||||| || ||||||||||| ||  ||||| |||||||||||| ||||||||||    
T  4364306 cactgaacataattaactacatatttgaattgcgttaactatctaaattgttgtcaaaatttg 4364244  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 19808796 - 19808832
Alignment:
Q  80 tttagtggatggataatgaatataacaaggtgtcaca 116  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  19808796 tttagtggatggttaacgaatataacaaggtgtcaca 19808832  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 4483990 - 4483922
Alignment:
Q  122 catccactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaatttgat 190  Q
    |||||||| |||||||||  ||||| ||||||||||| |||||||| | ||||||| ||||||||||||    
T  4483990 catccactgaacataattagccacacatttgaactgtgttaaccatgtcaattgttgtcaaaatttgat 4483922  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 32817250 - 32817217
Alignment:
Q  160 ttaaccatctaaattgttatcaaaatttgatttc 193  Q
    ||||||||||||||||||||||||||||||||||    
T  32817250 ttaaccatctaaattgttatcaaaatttgatttc 32817217  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 32409870 - 32409924
Alignment:
Q  122 catccactaaacataatttaccacatatttgaactgtattaaccatctaaattgt 176  Q
    ||||||||||||||||   | |||||||||||| |||||||||||||||| ||||    
T  32409870 catccactaaacataagcaagcacatatttgaattgtattaaccatctaatttgt 32409924  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 44962010 - 44961976
Alignment:
Q  83 agtggatggataatgaatataacaaggtgtcacag 117  Q
    |||||||||||||||||||||| ||||||||||||    
T  44962010 agtggatggataatgaatataataaggtgtcacag 44961976  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 5078989 - 5078927
Alignment:
Q  122 catccactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaa 184  Q
    |||| ||||||  ||||| |||| |||||||||||| |||||||||| |||||||| ||||||    
T  5078989 catctactaaatgtaattaaccatatatttgaactgcattaaccatccaaattgttgtcaaaa 5078927  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 6986768 - 6986830
Alignment:
Q  147 tatttgaactgtattaaccatctaaattgttatcaaaatttgatttccaatttgtgtcaaaat 209  Q
    ||||||||||| |||||||||||||||| || || ||||||| | || ||||| |||||||||    
T  6986768 tatttgaactgcattaaccatctaaattattttcgaaatttgttgtctaatttatgtcaaaat 6986830  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 7712351 - 7712404
Alignment:
Q  135 taatttaccacatatttgaactgtattaaccatctaaattgttatcaaaatttg 188  Q
    ||||| |||||||||||||||| | ||||||||||||| |||| || |||||||    
T  7712351 taattaaccacatatttgaactatgttaaccatctaaactgttgtcgaaatttg 7712404  T

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