View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6358_high_13 (Length: 252)

Name: NF6358_high_13
Description: NF6358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6358_high_13
NF6358_high_13
[»] chr8 (2 HSPs)
chr8 (1-157)||(17126203-17126359)
chr8 (25-158)||(24969433-24969566)
[»] chr3 (2 HSPs)
chr3 (13-153)||(12794100-12794239)
chr3 (23-68)||(15046531-15046576)
[»] chr2 (2 HSPs)
chr2 (9-62)||(27402424-27402477)
chr2 (119-157)||(27402525-27402563)
[»] chr5 (1 HSPs)
chr5 (25-149)||(10178100-10178224)
[»] scaffold0959 (1 HSPs)
scaffold0959 (25-147)||(540-661)
[»] chr6 (2 HSPs)
chr6 (35-93)||(14797149-14797207)
chr6 (112-154)||(14567802-14567844)
[»] scaffold0135 (1 HSPs)
scaffold0135 (106-147)||(31331-31372)
[»] chr4 (1 HSPs)
chr4 (106-147)||(9220680-9220721)
[»] scaffold0111 (1 HSPs)
scaffold0111 (25-68)||(31561-31604)
[»] chr1 (2 HSPs)
chr1 (9-68)||(30822076-30822135)
chr1 (118-153)||(35565506-35565541)
[»] chr7 (1 HSPs)
chr7 (53-157)||(15010343-15010447)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 17126203 - 17126359
Alignment:
Q  1 ttgaataaaaatatcctacttgacacttacgaaggcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacatcgtcacc 100  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17126203 ttgaataaaaatatcatacttgacacttatgaaggcatgaacatatgactcaataatgcatatgttcacccactaaattgttatcattaacatcgtcacc 17126302  T
Q  101 ttttgtacatacattcgtcatcaatatcgtcgtcattttgcatgtaagaattcgtca 157  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17126303 ttttgtacatgcattcgtcatcaatatcgtcgtcattttgcatgtaagaattcgtca 17126359  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 24969433 - 24969566
Alignment:
Q  25 acttacgaaggcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacatacattcgtcatcaa 124  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||| | |  |||||||  |||||  | || |||  |||  ||||| ||||| ||| |||    
T  24969433 acttatgaatgcatgaacatatgactcaataatgcatacgttcaacaaacaaatcgtcgtcattttcgtcttcatttttcatacatgcattcatcaacaa 24969532  T
Q  125 tatcgtcgtcattttgcatgtaagaattcgtcaa 158  Q
    || |||||||||||||||| ||||||||| ||||    
T  24969533 taacgtcgtcattttgcatataagaattcatcaa 24969566  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 12794100 - 12794239
Alignment:
Q  13 atcctacttgacacttacgaaggcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacatac 112  Q
    ||||||||||||||||| |  | |||||||||||||||||| |||||| ||||||| | || ||||||| ||||||  | |  |||  |||  ||||| |    
T  12794100 atcctacttgacacttatgttg-catgaacatatgactcaacaatgcacatgttcaacaacaaaatcgtcatcattttcgtattcatttttcatacatgc 12794198  T
Q  113 attcgtcatcaatatcgtcgtcattttgcatgtaagaattc 153  Q
    |||| |||||||||||||||||||||||||||||| |||||    
T  12794199 attcatcatcaatatcgtcgtcattttgcatgtaataattc 12794239  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 15046576 - 15046531
Alignment:
Q  23 acacttacgaaggcatgaacatatgactcaataatgcatatgttca 68  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||||||    
T  15046576 acacttatgaatgcatgaacatatgactcaacaatgcatatgttca 15046531  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 27402424 - 27402477
Alignment:
Q  9 aaatatcctacttgacacttacgaaggcatgaacatatgactcaataatgcata 62  Q
    |||||||||||||||||||||| || |||||||||||||| |||||||||||||    
T  27402424 aaatatcctacttgacacttactaatgcatgaacatatgattcaataatgcata 27402477  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 27402525 - 27402563
Alignment:
Q  119 catcaatatcgtcgtcattttgcatgtaagaattcgtca 157  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  27402525 catcaatatcgtcaccattttgcatgtaagaattcgtca 27402563  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 10178224 - 10178100
Alignment:
Q  25 acttacgaaggcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacatacattcgtcatcaa 124  Q
    ||||| ||| ||||||||||||||||||| |||||||| ||||| |    || |||| ||||||  | || |||  |||| ||||| ||||| |||||||    
T  10178224 acttatgaatgcatgaacatatgactcaacaatgcatacgttcaacatacaattcgtcatcattttcgtcttcattttttatacatgcattcatcatcaa 10178125  T
Q  125 tatcgtcgtcattttgcatgtaaga 149  Q
    || | ||||||||||||||||||||    
T  10178124 taacatcgtcattttgcatgtaaga 10178100  T

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Target: scaffold0959 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 540 - 661
Alignment:
Q  25 acttacgaaggcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacatacattcgtcatcaa 124  Q
    ||||| ||| ||||||| ||| ||||||| |||||||| ||||| | | |||||||| |||||| || || |||  |||  ||||| ||||| |||||||    
T  540 acttatgaatgcatgaatataagactcaacaatgcataagttcaacaa-taaatcgtcatcatttacgtcttcatttttcatacatgcattcatcatcaa 638  T
Q  125 tatcgtcgtcattttgcatgtaa 147  Q
     | ||||||||||||||||||||    
T  639 caacgtcgtcattttgcatgtaa 661  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 14797149 - 14797207
Alignment:
Q  35 gcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacat 93  Q
    |||||||||||||||||||||||||||| |||||| ||  || |||| |||||||||||    
T  14797149 gcatgaacatatgactcaataatgcatacgttcacacaacaagtcgtcatcattaacat 14797207  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 14567844 - 14567802
Alignment:
Q  112 cattcgtcatcaatatcgtcgtcattttgcatgtaagaattcg 154  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||    
T  14567844 cattcgtcatcaatatcatcgtcattttgcacgtaataattcg 14567802  T

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Target: scaffold0135 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 31331 - 31372
Alignment:
Q  106 tacatacattcgtcatcaatatcgtcgtcattttgcatgtaa 147  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  31331 tacatgcattcgtcatcaataacgtcgtcattttgcatgtaa 31372  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 9220680 - 9220721
Alignment:
Q  106 tacatacattcgtcatcaatatcgtcgtcattttgcatgtaa 147  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  9220680 tacatgcattcgtcatcaataacgtcgtcattttgcatgtaa 9220721  T

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Target: scaffold0111 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 31604 - 31561
Alignment:
Q  25 acttacgaaggcatgaacatatgactcaataatgcatatgttca 68  Q
    ||||| ||| |||||||||||||||||||||||||||| |||||    
T  31604 acttatgaatgcatgaacatatgactcaataatgcatacgttca 31561  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 30822076 - 30822135
Alignment:
Q  9 aaatatcctacttgacacttacgaaggcatgaacatatgactcaataatgcatatgttca 68  Q
    |||||||| |||  ||| ||| ||| |||||||||||||||||||||||||||| |||||    
T  30822076 aaatatccgactcaacatttatgaatgcatgaacatatgactcaataatgcatacgttca 30822135  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 35565506 - 35565541
Alignment:
Q  118 tcatcaatatcgtcgtcattttgcatgtaagaattc 153  Q
    |||||||||||||||||||||||||||||| |||||    
T  35565506 tcatcaatatcgtcgtcattttgcatgtaataattc 35565541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 15010447 - 15010343
Alignment:
Q  53 ataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacatacattcgtcatcaatatcgtcgtcattttgcatgtaagaatt 152  Q
    |||||||||  ||||||| |  ||||| | ||||||||||||||||| || | || ||   ||| |||||||||||||||||  ||||||||||| || |    
T  15010447 ataatgcatccgttcacctaacaaatcatcatcattaacatcgtcactttctataaatgtgttcatcatcaatatcgtcgtctctttgcatgtaataact 15010348  T
Q  153 cgtca 157  Q
    |||||    
T  15010347 cgtca 15010343  T

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