View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6358_high_19 (Length: 241)
Name: NF6358_high_19
Description: NF6358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6358_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 53 - 225
Target Start/End: Original strand, 6117056 - 6117228
Alignment:
| Q |
53 |
tttggacatcaaaacaatggtccccaacaaagctgttgttgaccacaacattataagttcacttttcatttcaatttccacatcaattctcattctttat |
152 |
Q |
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| T |
6117056 |
tttggacatcaaaacaatggtccccaacaaagctgttgttgaccacaacattataagttcacttttcattacaatttccacatcaattctcattctttat |
6117155 |
T |
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| Q |
153 |
agaagcttcccctgcttaacaccacacttcacttccactataatcttcaatggacacaatccttctctttcta |
225 |
Q |
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| T |
6117156 |
agaagcttccccagcttaacaccacacttcacttccactataatctttaatggacacaatccttctctttcta |
6117228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 191
Target Start/End: Complemental strand, 6119951 - 6119849
Alignment:
| Q |
88 |
ttgttgaccacaacattataagttcacttttcatttcaatttccac----atcaattctcattctttatagaagcttcccctgcttaacaccacacttca |
183 |
Q |
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|||||| ||||||||||||| | ||||||||||| |||||||||| || |||||||||||||||||||| |||| || |||||||||||||| |
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| T |
6119951 |
ttgttgtccacaacattatacttacacttttcattacaatttccactttaattaattctcattctttatagaaccttctcc-----aacaccacacttca |
6119857 |
T |
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| Q |
184 |
cttccact |
191 |
Q |
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|||||||| |
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| T |
6119856 |
cttccact |
6119849 |
T |
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