View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6358_high_2 (Length: 694)
Name: NF6358_high_2
Description: NF6358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6358_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 347 - 676
Target Start/End: Complemental strand, 47536090 - 47535761
Alignment:
| Q |
347 |
attgtaaaatgacagtcaaaatagtctcttgattagttggtctttgaaccggataccgagttttcaaaataaataaatagtctctttattgctacctttg |
446 |
Q |
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||||||||||| | |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47536090 |
attgtaaaatgtcggtcaaaatagtctctttatttgttggtctttgaaccggataccgagttttcaaaataaataaatagtctctttattactacctttg |
47535991 |
T |
|
| Q |
447 |
tccctgtatgtaagacacctttgtnnnnnnnttgtcccattttataagacaattttcaaattacaaaatacattaatgatcttttcataaaaataccctt |
546 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47535990 |
tccctgtatgtaagacacctttgtaaaaaaattgtccctttttataagacaatttccaaattacaaaatacattaatgatcttttcataaaaataccctt |
47535891 |
T |
|
| Q |
547 |
aattaaatggagaaaattaaaaggctaaccatttatttcacttaataattgaagaacattttaggaagtgaatgtatattgctagcaaatttaatgtaaa |
646 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47535890 |
aattaaatggagaaaattaaaaggctaaccatttatttcacttaataattgaagaacattttaggaagtgaatgtatattgctagcaaatttaatgtaaa |
47535791 |
T |
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| Q |
647 |
aatattttttcttaattcttacgcattggc |
676 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
47535790 |
aatattttttcttaattcttacgcattggc |
47535761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 47536390 - 47536132
Alignment:
| Q |
12 |
atgaagaatcagctaaagtatacacaaccagtgcatcttccttcactgcttgctttattatctccaataacctctctacatcatcaatctagtcaacaac |
111 |
Q |
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| T |
47536390 |
atgaagaatcagctaaagtatacacaaccagtgcatcttccttcactgcttgctttattatctccaataacctctctacatcatcaatctagtcaacaac |
47536291 |
T |
|
| Q |
112 |
aacaaaatataaacaatttgtcnnnnnnnnnnnnnttgcgatgattaaaattagtgttttgaatagtataatatatgctattatcgagtgaataagaata |
211 |
Q |
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| T |
47536290 |
aacaaaatataaacaatttgtcaaaaaaacaaaaattgcgatgattaaaattagtgttttgaatagtataatatatgctattttcgagtgaataagaata |
47536191 |
T |
|
| Q |
212 |
ttgttccacggaattgtaattattggtaaaaatagtccctaattttttcggattagcaa |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47536190 |
ttgttccacggaattgtaattattggtaaaaatagtccctaattttttcggattagcaa |
47536132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 47536095 - 47536057
Alignment:
| Q |
290 |
ctcagattgtaaaatgtcggtcaaaatagtctctatatt |
328 |
Q |
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| T |
47536095 |
ctcagattgtaaaatgtcggtcaaaatagtctctttatt |
47536057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 528 - 602
Target Start/End: Complemental strand, 43235744 - 43235670
Alignment:
| Q |
528 |
ttttcataaaaatacccttaattaaatggagaaaattaaaaggctaaccatttatttcacttaataattgaagaa |
602 |
Q |
| |
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|||||| |||| ||||| |||||||||||||| ||||||||| |||||||||||| || |||| |||||| |||| |
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| T |
43235744 |
ttttcacaaaagtacccctaattaaatggagagaattaaaagactaaccatttatctctcttagtaattggagaa |
43235670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 504 - 569
Target Start/End: Original strand, 14893911 - 14893976
Alignment:
| Q |
504 |
aaattacaaaatacattaatgatcttttcataaaaatacccttaattaaatggagaaaattaaaag |
569 |
Q |
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| T |
14893911 |
aaattacaaaatgcattagttattttttcacaaaaatacccccaattaaatggagaaaattaaaag |
14893976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 486 - 599
Target Start/End: Original strand, 32757281 - 32757395
Alignment:
| Q |
486 |
ttttataagacaattttcaaattacaaaatacattaatgatcttttcataaaaatacccttaatt-aaatggagaaaattaaaaggctaaccatttattt |
584 |
Q |
| |
|
||||||||||| ||| || ||||||| || ||||| | | ||||||||||||||||| ||||| ||||||||| |||| |||| | |||||||||| | |
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| T |
32757281 |
ttttataagactgtttacagattacaagatgcattatttgttttttcataaaaatacccctaattaaaatggagataattgaaagcccaaccatttatct |
32757380 |
T |
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| Q |
585 |
cacttaataattgaa |
599 |
Q |
| |
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| T |
32757381 |
ctattaataattgaa |
32757395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 525
Target Start/End: Original strand, 23982554 - 23982601
Alignment:
| Q |
478 |
ttgtcccattttataagacaattttcaaattacaaaatacattaatga |
525 |
Q |
| |
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|||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
23982554 |
ttgtcccattttataatatccttttcaaattacaaaatacattaatga |
23982601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 498 - 593
Target Start/End: Original strand, 35521671 - 35521768
Alignment:
| Q |
498 |
attttcaaattacaaaatacattaatgatcttttcataaaa----atacccttaattaaatggagaaaattaaaaggctaaccatttatttcacttaata |
593 |
Q |
| |
|
||||||||||||||| |||||||| ||||| ||||| |||| |||||||||||||||||| | ||| |||||| |||| ||||||| || ||||||| |
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| T |
35521671 |
attttcaaattacaagatacattagtgatc-tttcacaaaaatacatacccttaattaaatgg-ggaaactaaaagactaatcatttatctctcttaata |
35521768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 422
Target Start/End: Original strand, 28779321 - 28779366
Alignment:
| Q |
377 |
gattagttggtctttgaaccggataccgagttttcaaaataaataa |
422 |
Q |
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||||||| ||||||| ||||||||||||||||| ||||| |||||| |
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| T |
28779321 |
gattagtaggtctttaaaccggataccgagtttccaaaagaaataa |
28779366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 499 - 600
Target Start/End: Complemental strand, 26804721 - 26804621
Alignment:
| Q |
499 |
ttttcaaattacaaaatacattaatgatcttttcataaaaatacccttaattaaatggagaaaattaaaaggctaaccatttatttcacttaataattga |
598 |
Q |
| |
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|||||||||||||| || ||||||||| ||| || |||| || || |||||||||||||| ||||||||| |||| |||||| || ||||||||||| |
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| T |
26804721 |
ttttcaaattacaaggtatattaatgatattt-cacaaaagtatccataattaaatggagagaattaaaagattaacaatttatctcttttaataattga |
26804623 |
T |
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| Q |
599 |
ag |
600 |
Q |
| |
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|| |
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| T |
26804622 |
ag |
26804621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 479 - 523
Target Start/End: Original strand, 24924497 - 24924541
Alignment:
| Q |
479 |
tgtcccattttataagacaattttcaaattacaaaatacattaat |
523 |
Q |
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|||||| ||||||||||| ||||||||||| |||| ||||||||| |
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| T |
24924497 |
tgtccctttttataagactattttcaaatttcaaagtacattaat |
24924541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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