View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6358_high_20 (Length: 239)
Name: NF6358_high_20
Description: NF6358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6358_high_20 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 42339930 - 42339711
Alignment:
| Q |
20 |
cctctattatttgggtgcatttcaagatgcctctaattctaatttagattatttaatattatccaaacatgatcaattgttggtcttgattctcgagttc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42339930 |
cctctattatttgggtgcatttcaagatgcctctaattctaatttagattatttaatattatccaaacatgatcaattgttggtcttgattctcgagttc |
42339831 |
T |
|
| Q |
120 |
actgaatttcacatagaaaatccaatatttgatcagaacccagctcaaaagtaagcagatactgcaccaccatcgctctatcaat-gaataattgaatat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42339830 |
actgaatttcacatagaaaatccaatatttgatcagaa-ccagctcaaaagtaagcagaaactgcaccaccatcgctctatcaatggaataattgaatat |
42339732 |
T |
|
| Q |
219 |
cgaagcaactactacttttat |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
42339731 |
cgaagcaactactacttttat |
42339711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University