View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6358_high_21 (Length: 236)
Name: NF6358_high_21
Description: NF6358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6358_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 8569520 - 8569741
Alignment:
| Q |
1 |
tgtcttgagccttgaaattctcagcttcctggatcattctctcaatttgtccccttgataatcttcccttgtcattagttattgtaatttcatttttatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8569520 |
tgtcttgagccttgaaattctcagcttcctggatcattctctcaatttgtccccttgataatcttcccttctcattagttattgtaatttcatttttatt |
8569619 |
T |
|
| Q |
101 |
gccactggtttcttccactgctgagacgttcaaaattccttcagcatctattgtaaagcatactttgtgaggatgacctcgaggtgcgagaggaagtgaa |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8569620 |
gccactggtttcttccactgcagagacgttcaaaattccatcagcatctattgtaaagcatactttgtgaggatgacctcgaggtgcgagaggaagtgaa |
8569719 |
T |
|
| Q |
201 |
agagaaaacaaaccaagcaagt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
8569720 |
agagaaaacaaaccaagcaagt |
8569741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 8544842 - 8545005
Alignment:
| Q |
1 |
tgtcttgagccttgaaattctcagcttcctggatcattctctcaatttgtccccttgataatcttcccttgtcattagttattgtaatttcatttttatt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||| || ||| ||||||||||||||||||| ||| | |
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| T |
8544842 |
tgtcttgagccttgaaattgtcagcttcctggatcattctctcaatttcttcccttgataatcttccattttcaatagttattgtaatttcattcttact |
8544941 |
T |
|
| Q |
101 |
gccactggtttcttccactgctgagacgttcaaaattccttcagcatctattgtaaagcatact |
164 |
Q |
| |
|
|||||||||||||| ||| |||||||| || | || | ||||||||| | |||||||||| |
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|
| T |
8544942 |
accactggtttcttctgttgcagagacgtttaataaaccattagcatctatagcaaagcatact |
8545005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 8537256 - 8537431
Alignment:
| Q |
12 |
ttgaaattctcagcttcctggatcattctctcaatttgtccccttgataatcttcccttgtcattagttattgtaatttcatttttattgccactggttt |
111 |
Q |
| |
|
||||||||||||||||| || || ||||||| ||||| | ||||||||||||| | ||||||||||| ||||| || || ||||| ||| ||||| |
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|
| T |
8537256 |
ttgaaattctcagcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccagaggttt |
8537355 |
T |
|
| Q |
112 |
cttccactgctgagacgttcaaaattccttcagcatctattgtaaagcatactttgtgaggatgacctcgaggtgc |
187 |
Q |
| |
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| ||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
8537356 |
catcctcacaagagacgttcaaaattccatcagcatctattgtaaagcatactttgtgaggaaggcctcgaggtgc |
8537431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 8589847 - 8590009
Alignment:
| Q |
1 |
tgtcttgagccttgaaattctcagcttcctggatcattctctcaatttgtccccttgataatcttcccttgtcattagttattgtaatttcatttttatt |
100 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||||||||||||||||||| | | |||| | |||||| || ||||| ||||||||||| | |||||||| |
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|
| T |
8589847 |
tgtcttcagccttgaagtgctcagcttcctggatcattctctcaatttcttcgcttgtcagtcttccattttcattggttattgtaatattttttttatt |
8589946 |
T |
|
| Q |
101 |
gccactggtttcttccactgctgagacgttcaaaattccttcagcatctattgtaaagcatac |
163 |
Q |
| |
|
|||||| |||||||| | || || ||||| || || || ||||||||||| | ||||||||| |
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|
| T |
8589947 |
accactgctttcttcctcagcagacacgtttaatataccatcagcatctatagaaaagcatac |
8590009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 8601191 - 8601270
Alignment:
| Q |
12 |
ttgaaattctcagcttcctggatcattctctcaatttgtccccttgataatcttcccttgtcattagttattgtaatttc |
91 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| | | |||||| ||||||||| ||||| |||||||||||||| |
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|
| T |
8601191 |
ttgaaattctcagcttcttggatcattctctcaatttcttcggttgatagtcttcccttttcattcgttattgtaatttc |
8601270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 29582794 - 29582688
Alignment:
| Q |
10 |
ccttgaaattctcagcttcctggatcattctctcaatttgtccccttgataatcttcccttgtcattagttattgtaatttcatttttattgccactggt |
109 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| | | |||| |||||||| || |||| ||||||||||| || |||||||| ||| |||| |
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|
| T |
29582794 |
ccttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctcttttttatttccagtggt |
29582695 |
T |
|
| Q |
110 |
ttcttcc |
116 |
Q |
| |
|
||||||| |
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|
| T |
29582694 |
ttcttcc |
29582688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 165
Target Start/End: Original strand, 8609137 - 8609290
Alignment:
| Q |
12 |
ttgaaattctcagcttcctggatcattctctcaatttgtccccttgataatcttcccttgtcattagttattgtaatttcatttttattgccactggttt |
111 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||| | | |||| | || || || || || ||||| ||||| || || ||||| |||||||||| |
|
|
| T |
8609137 |
ttgaaattctcagcttcttgaatcattctctcaatttcttcagttgaaagtcgaccattttcctttgttatagtaatatctttcttattaccactggttt |
8609236 |
T |
|
| Q |
112 |
cttccactgctgagacgttcaaaattccttcagcatctattgtaaagcatactt |
165 |
Q |
| |
|
||||| |||| ||||| || || || || ||||||||||| | ||||||||||| |
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|
| T |
8609237 |
cttcctctgcagagacatttaatataccatcagcatctatagcaaagcatactt |
8609290 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 7878692 - 7878542
Alignment:
| Q |
1 |
tgtcttgagccttgaaattctcagcttcctggatcattctctcaatttgtccccttgataatcttcccttgtcattagttattgtaatttcatttttatt |
100 |
Q |
| |
|
|||||| || |||||| | ||||||||| | ||| |||||||||||| | ||||||||| |||||| || ||||| || ||||||||||| || || || |
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|
| T |
7878692 |
tgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgtt |
7878593 |
T |
|
| Q |
101 |
gccactggtttcttccactgctgagacgttcaaaattccttcagcatctat |
151 |
Q |
| |
|
||||| ||||||||| ||| ||||| || || || || ||||||||||| |
|
|
| T |
7878592 |
accacttgtttcttcctttgcggagacatttaatataccatcagcatctat |
7878542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8383838 - 8383791
Alignment:
| Q |
1 |
tgtcttgagccttgaaattctcagcttcctggatcattctctcaattt |
48 |
Q |
| |
|
|||||| ||||||||||||||| || || ||||||||||||||||||| |
|
|
| T |
8383838 |
tgtcttcagccttgaaattctctgcctcttggatcattctctcaattt |
8383791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 12527715 - 12527934
Alignment:
| Q |
3 |
tcttgagccttgaaattctcagcttcctggatcattctctcaatttgtccccttgataatcttcccttgtcattagttattgtaatttcatttttattgc |
102 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||| | | |||||||||||||| || ||||| ||||||||||| || || ||||| | |
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|
| T |
12527715 |
tcttcagccttgaaattctcagcttcctggatcattctcccaatttcttcacttgataatcttccattttcatttgttattgtaatatctttcttattac |
12527814 |
T |
|
| Q |
103 |
cactggtttcttccactgctgagacgttcaaaattccttcagcatctattgtaaagcatactttgtgaggatgacctcgaggtgcgagaggaagtgaaag |
202 |
Q |
| |
|
||||||||| |||| || ||||| || || || || ||||||||||| | ||||||||||| | |||| | |||||||| |||||| |||||| |
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|
| T |
12527815 |
cactggttttttccttcgcagagacttttaatataccgtcagcatctatagcaaagcatacttggacaggaaggtaacgaggtgcatgaggaactgaaag |
12527914 |
T |
|
| Q |
203 |
agaaaacaaaccaagcaagt |
222 |
Q |
| |
|
| ||| ||||||||||||| |
|
|
| T |
12527915 |
acgaaagaaaccaagcaagt |
12527934 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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