View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6358_high_3 (Length: 692)
Name: NF6358_high_3
Description: NF6358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6358_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Original strand, 43695794 - 43696219
Alignment:
| Q |
18 |
acaacatgtgatgccgccattagtaatgacaacctatcatagtagtaactaaagtatggtttgaatgtagatggttttcacctgatctggttcaatacaa |
117 |
Q |
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| T |
43695794 |
acaacatgtgatgccgccattagtaatgacaacctatcatagtagtaactaaagtatggtttgaatctaggtg-ttttcacctgatctggttcaatacaa |
43695892 |
T |
|
| Q |
118 |
gtagaaatattgtagcaaataaatggagctataatttaattttttactttctttccctccacnnnnnnnncttctctaaaccaaacatggtggtagtgat |
217 |
Q |
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| T |
43695893 |
gtagaaattt---agcaaataaatggagctataatttaattttttactttctttccctccacttttttttcttctctaaaccaaacatggtggtagtgat |
43695989 |
T |
|
| Q |
218 |
tgcacacaacacaaatccaaataaaagcatatgaatcagtgaaacaccatggcatcactatttatttttatcgccgcataagaaaagttcatgtgactga |
317 |
Q |
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| T |
43695990 |
tgcacacagcacaaatccaaataaaagcacatgaatcagtgaaacaccatggcatcactatttatttttatcgccgcataagaaaagctcatgtgactga |
43696089 |
T |
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| Q |
318 |
cactcttccaacaaatgtctttgcccttgtccttgtcatattcctcaatctgagacatattttaaatgaaccattatcacatggaccaacctgtagatag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43696090 |
cactcttccaacaaatgtctttgcccttgtccttgtcatattcctcaatctgagacatattttaaatgaaccattatcacatggaccaacctgtgtatag |
43696189 |
T |
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| Q |
418 |
nnnnnnngaaccttttatttaatacaatga |
447 |
Q |
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| T |
43696190 |
aaaaaaagaaccttttatttaatacaatga |
43696219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 445 - 681
Target Start/End: Original strand, 43696246 - 43696478
Alignment:
| Q |
445 |
tgagctcatagagtccaataatgctagaaagcatgtcccatctttgcactatatattatacatttgattcagcttcattcaggtcacaatgggacagatt |
544 |
Q |
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| T |
43696246 |
tgagctcatagagtccaataatgctagaaagcatgtcccatctttgcactat----tatacatttgattcagcttcattcaggtcacaatgggacagatt |
43696341 |
T |
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| Q |
545 |
tactttttctattatttcccacctttccacttatggatataaaattaacttaatgacataatttagaatgttaagcatgcaatgcttttcaatcaataag |
644 |
Q |
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| T |
43696342 |
tactttttctattatttcccacctttccacttatggatataaaattaacttaatgacataatttagaatgttaagcatgcaatgcttttcaatcaataag |
43696441 |
T |
|
| Q |
645 |
ttttctaatgacacaatttataagtaatatggagtat |
681 |
Q |
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| T |
43696442 |
ttttctaatgacacaatttataagtaatatggagtat |
43696478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 594 - 626
Target Start/End: Complemental strand, 32214108 - 32214076
Alignment:
| Q |
594 |
ttaatgacataatttagaatgttaagcatgcaa |
626 |
Q |
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| T |
32214108 |
ttaatgacataatttaaaatgttaagcatgcaa |
32214076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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