View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6358_high_8 (Length: 278)

Name: NF6358_high_8
Description: NF6358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6358_high_8
NF6358_high_8
[»] chr3 (1 HSPs)
chr3 (12-106)||(11462084-11462180)
[»] chr2 (2 HSPs)
chr2 (44-106)||(415418-415480)
chr2 (215-253)||(415545-415583)


Alignment Details
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 11462180 - 11462084
Alignment:
Q  12 attcttcaccttattccattgacaaaatcaa--caccttatgtgttctgcttctccaatccaattgaaagaaaccaagttgggatgtttgattcctt 106  Q
    |||||||||||||||||||||||||||||||  ||||||| |||| |||||||||||||||||||||||||||||||||||| || |||||||||||    
T  11462180 attcttcaccttattccattgacaaaatcaaatcaccttacgtgtcctgcttctccaatccaattgaaagaaaccaagttggaatctttgattcctt 11462084  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 415418 - 415480
Alignment:
Q  44 accttatgtgttctgcttctccaatccaattgaaagaaaccaagttgggatgtttgattcctt 106  Q
    ||||||||| |  ||||| ||||||||||||||||||||||||||| |||| |||||||||||    
T  415418 accttatgtatcatgcttatccaatccaattgaaagaaaccaagttaggatatttgattcctt 415480  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 415545 - 415583
Alignment:
Q  215 tgttcacagcaaccagaaccaaaccatccttagaacctt 253  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  415545 tgttgacagcaaccagaaccaaaccatccatagaacctt 415583  T

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