View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6358_high_9 (Length: 274)
Name: NF6358_high_9
Description: NF6358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6358_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 256
Target Start/End: Complemental strand, 40780438 - 40780183
Alignment:
| Q |
5 |
gagcagcacagagaacatgttaaagatgggattgtgatatactgatatattatgattttggagttcc-gccctgaccatttgggagcaatagttgtcacc |
103 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40780438 |
gagcagcacaaagaacatgttaaagatgggattgtgatatactgatatattatgattttggagttcccgccctgaccatttgggagcaatagttgtcacc |
40780339 |
T |
|
| Q |
104 |
tttagtacatttct---aagaaaaannnnnnnnnnnngactcgggaaataatgta--ctcatggatgacgtaagttattccaaattaaaggagacactat |
198 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40780338 |
tttagtacatttctggaaagaaaaaacacacacac--gactcgggaaataatgtaaactcatggatgacgtaagttattccaaattaaaggagacactag |
40780241 |
T |
|
| Q |
199 |
gtaagtgtagatactcattcaataaaaaatgattcaagtgatgcaattagactatggt |
256 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40780240 |
gtcagtgtagatactcattcaataaaaaatgattcaagtgatgcaattagactatggt |
40780183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University