View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6358_low_15 (Length: 250)
Name: NF6358_low_15
Description: NF6358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6358_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 8569392 - 8569149
Alignment:
| Q |
1 |
agcaatgaccaagggaaaaagtttgattggtgatagccagcaagaagatacctttgtgtttgtggactttctgaaggagcttgagatcatctttgaatct |
100 |
Q |
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| T |
8569392 |
agcaatgaccaagggaaaaagtttgattggtgatagccagcaagaagatacctttgtgtttgtggactttctgaaggagcttgagagcatctttgaatct |
8569293 |
T |
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| Q |
101 |
gctatgaacaagatcaacaaaggtgactttgatgagaaaagtgattcggattcttagcaataattttttgttatttgattcttagcataatgttggatct |
200 |
Q |
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| T |
8569292 |
gctatgaacaagatcaacaaaggtgactctgatgagaaaagtgattcggattcttagcaataattttttgttatttgattcttagcataatgttggatct |
8569193 |
T |
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| Q |
201 |
ggttgttttgattttctgatgatacattttgatatcctatgcta |
244 |
Q |
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| T |
8569192 |
ggttgttttgattttctgatgacacattttgatatagtatgcta |
8569149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 155
Target Start/End: Complemental strand, 8544713 - 8544560
Alignment:
| Q |
2 |
gcaatgaccaagggaaaaagtttgattggtgatagccagcaagaagatacctttgtgtttgtggactttctgaaggagcttgagatcatctttgaatctg |
101 |
Q |
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| T |
8544713 |
gcaatgataaagggaaaaagtttgattgataacaaccaacaggaagatgcatttgtgtttgtggactttttgaaggagcttgagagcatctttgaatctt |
8544614 |
T |
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| Q |
102 |
ctatgaacaagatcaacaaaggtgactttgatgagaaaagtgattcggattctt |
155 |
Q |
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| T |
8544613 |
ccatgaacaagatcaaccaaggttaatctgatggggaaagtgatttggattctt |
8544560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 8580777 - 8580656
Alignment:
| Q |
2 |
gcaatgaccaagggaaaaagtttgattggtgatagccagcaagaagatacctttgtgtttgtggactttctgaaggagcttgagatcatctttgaatctg |
101 |
Q |
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| T |
8580777 |
gcaatgataaagggaaaaagtttgattgataacaaccaacaggaagatgcatttgtgtttgtggactttctgaaggagcttgagagcatctttgaatctt |
8580678 |
T |
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| Q |
102 |
ctatgaacaagatcaacaaagg |
123 |
Q |
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| T |
8580677 |
ccatgaacaagatcaagaaagg |
8580656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 8608946 - 8608847
Alignment:
| Q |
53 |
tttgtgtttgtggactttctgaaggagcttgagatcatctttgaatctgctatgaacaagatcaacaaaggtgactttgatgagaaaagtgattcggatt |
152 |
Q |
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| T |
8608946 |
tttgtgtttgtggactttctgaaggagcttgagaagatatttgaatctgctttgaacaagattaataaaggttactctgatgaggaaagtgattctgatt |
8608847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 8575380 - 8575235
Alignment:
| Q |
1 |
agcaatgaccaagggaaaaagtttgattggtgatagccagcaagaagatacctttgtgtttgtggactttctgaaggagcttgagatcatctttgaatct |
100 |
Q |
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|||||||| |||||| |||||||||| | || || |||||| ||||||| | ||| ||||| ||||| || ||||||||||||| ||||||||||||| |
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| T |
8575380 |
agcaatgataaagggagaaagtttgatcgatggtaaccagcaggaagatatgtctgtttttgtagacttgctaaaggagcttgagagcatctttgaatct |
8575281 |
T |
|
| Q |
101 |
gctatgaacaagatcaacaaaggtgactttgatgagaaaagtgatt |
146 |
Q |
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||| ||||||||| |||||||| ||| ||||||| ||||||||| |
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| T |
8575280 |
tctaagaacaagattaacaaaggctactctgatgaggaaagtgatt |
8575235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 8383976 - 8384122
Alignment:
| Q |
11 |
aagggaaaaagtttgattggtgatagccagcaagaagatacctttgtgtttgtggactttctgaaggagcttgagatcatctttgaatctgctatgaaca |
110 |
Q |
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||||| ||||| ||||||| || || | |||| |||| || ||||| |||||||||||||||| ||||||||||| |||||||||||||| | | |||| |
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| T |
8383976 |
aaggggaaaaggttgattgatggtaacaagcacaaagaaacatttgtatttgtggactttctgatggagcttgagagcatctttgaatctgttttaaaca |
8384075 |
T |
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| Q |
111 |
agatcaacaaaggtgactttgatgagaaaagtgattcggattcttag |
157 |
Q |
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| T |
8384076 |
agatccaaattggttgctctgatgaggaaagtgattctgattcttag |
8384122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 156
Target Start/End: Complemental strand, 12527584 - 12527430
Alignment:
| Q |
2 |
gcaatgaccaagggaaaaagtttgattggtgatagccagcaagaagatacctttgtgtttgtggactttctgaaggagcttgagatcatctttgaatctg |
101 |
Q |
| |
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||||||| ||||||||||| ||||||| || | | |||| |||||||| ||||||||| |||||||| ||||||||||||||| |||||||| ||||| |
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| T |
12527584 |
gcaatgataaagggaaaaagcttgattgatggaaacaagcaggaagatacatttgtgtttttggactttttgaaggagcttgagagcatctttggatctg |
12527485 |
T |
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| Q |
102 |
ctatgaacaagatcaacaaaggtgactttgatgagaaaagtgattcggattctta |
156 |
Q |
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|| |||| ||||||||||||||| ||| | ||| |||||||||| |||||||| |
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| T |
12527484 |
ctttgaataagatcaacaaaggttactccggtgaagaaagtgattctgattctta |
12527430 |
T |
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