View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6358_low_16 (Length: 247)
Name: NF6358_low_16
Description: NF6358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6358_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 42054309 - 42054410
Alignment:
| Q |
16 |
aatatatactccctcccatgagtggaactagtcacattaatgaatatgcgtccactatttaccaattggaccaacttacattgaccttttattaattatt |
115 |
Q |
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| T |
42054309 |
aatatatactccctcccatgagtggaactagtcacattaatgaatatgcgtccactatttaccaattggaccaacttacaatgaccttttattaattatt |
42054408 |
T |
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| Q |
116 |
ga |
117 |
Q |
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|| |
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| T |
42054409 |
ga |
42054410 |
T |
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Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 146 - 234
Target Start/End: Original strand, 42054439 - 42054527
Alignment:
| Q |
146 |
aagaatcttactccactacacccctcataatggggatacaatgagtatttaattttccataagagtgaatgtgaagtggtgctttgcct |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42054439 |
aagaatcttactccactacacccctcataatggggatacaatgagtatttaattttccataagagtgaatgtgaagtggtgctttgcct |
42054527 |
T |
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