View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6358_low_23 (Length: 225)

Name: NF6358_low_23
Description: NF6358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6358_low_23
NF6358_low_23
[»] chr2 (4 HSPs)
chr2 (12-206)||(12247585-12247772)
chr2 (14-206)||(11995158-11995339)
chr2 (157-206)||(32682448-32682497)
chr2 (36-98)||(32682496-32682554)
[»] chr5 (7 HSPs)
chr5 (43-206)||(42128052-42128211)
chr5 (108-206)||(42116967-42117065)
chr5 (77-206)||(42122687-42122816)
chr5 (41-206)||(34241320-34241475)
chr5 (112-206)||(34233547-34233641)
chr5 (115-206)||(41714277-41714368)
chr5 (43-98)||(42116894-42116945)
[»] chr4 (1 HSPs)
chr4 (80-206)||(11117347-11117473)
[»] chr6 (1 HSPs)
chr6 (108-206)||(25523791-25523889)
[»] chr3 (1 HSPs)
chr3 (108-206)||(8522341-8522439)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 12247585 - 12247772
Alignment:
Q  12 tgagatgaaacttatttaaaatatagaaggtaaaaactaacacacaatagagaaaataaccacaaacaacaataagactacgacattgccaccatttgat 111  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  12247585 tgagatcaaacttatttaaaatatagaaggtaaaaactaacacacaatagagaaaataaccacaac-------aagactacgacattgccaccatttgat 12247677  T
Q  112 tctgattcatggttgcaccatggttcctactcactcttgctctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatcta 206  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12247678 tctgattcatggttgcaccatggttcctactcactcttgttctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatcta 12247772  T

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Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 11995339 - 11995158
Alignment:
Q  14 agatgaaacttatttaaaatatagaaggtaaaaactaacacacaatagagaaaataaccacaaacaacaataagactacgacattgccaccatttgattc 113  Q
    |||| |||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||         ||||||    
T  11995339 agatcaaacttatttaaaataca--aggtaaaaactaacacacaatagagaaaataaccacaaacaacaataagactaagacatt---------tgattc 11995251  T
Q  114 tgattcatggttgcaccatggttcctactcactcttgctctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatcta 206  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11995250 tgattcatggttgcaccatggttcctactcactcttgttctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatcta 11995158  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 32682497 - 32682448
Alignment:
Q  157 ttttcactcttcttttaggctgaccaccaaatatcatcacaagccatcta 206  Q
    ||||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  32682497 ttttcactcttctcttaggatgaccaccaattatcatcacaagccatcta 32682448  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 32682554 - 32682496
Alignment:
Q  36 agaaggtaaaaactaacacacaatagagaaaataaccacaaacaacaataagactacgacatt 98  Q
    |||| |||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||    
T  32682554 agaaagtaaaaactaacacacaatagagaaaataagc----acaacaataagactatgacatt 32682496  T

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Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 206
Target Start/End: Original strand, 42128052 - 42128211
Alignment:
Q  43 aaaaactaacacacaatagagaaaataaccacaaacaacaataagactacgacattgccaccatttgattctgattcatggttgcaccatggttcctact 142  Q
    ||||||||| ||||||||||||||||||| | ||    |||||| |||| ||||||  |||||| ||||||||||||||||||| ||||||   ||| ||    
T  42128052 aaaaactaatacacaatagagaaaataactagaa----caataaaactatgacatttgcaccatctgattctgattcatggttgaaccatgtgccctcct 42128147  T
Q  143 cactcttgctctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatcta 206  Q
    |||||||| ||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||    
T  42128148 cactcttgttctccttgtcactcttctcttaggctgaccaccaaatatcataacaagccatcta 42128211  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 108 - 206
Target Start/End: Original strand, 42116967 - 42117065
Alignment:
Q  108 tgattctgattcatggttgcaccatggttcctactcactcttgctctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatcta 206  Q
    ||||||||||||||||||| |||||||||||| |||| ||||| ||| |||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  42116967 tgattctgattcatggttgtaccatggttccttctcattcttgttcttcttttcactcttctcttaggctgaccaccaaatatcatcacaatccatcta 42117065  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 77 - 206
Target Start/End: Original strand, 42122687 - 42122816
Alignment:
Q  77 acaacaataagactacgacattgccaccatttgattctgattcatggttgcaccatggttcctactcactcttgctctccttttcactcttcttttaggc 176  Q
    |||||||||| |||| ||||||  |||||| ||||||||||||||||||| ||||||   ||| |||||||||| ||||||| |||||||||| ||||||    
T  42122687 acaacaataaaactatgacatttgcaccatctgattctgattcatggttgaaccatgtgccctcctcactcttgttctccttgtcactcttctcttaggc 42122786  T
Q  177 tgaccaccaaatatcatcacaagccatcta 206  Q
     |||||||||||||||| ||||||||||||    
T  42122787 ggaccaccaaatatcatgacaagccatcta 42122816  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 41 - 206
Target Start/End: Complemental strand, 34241475 - 34241320
Alignment:
Q  41 gtaaaaactaacacacaatagagaaaataaccacaaacaacaataagactacgacattgccaccatttgattctgattcatggttgcaccatggttccta 140  Q
    ||||||||||||||||||||||||||||||||| ||     ||||| |||| ||||||  ||||||      |||||||||||||| ||||| ||| ||     
T  34241475 gtaaaaactaacacacaatagagaaaataaccagaat----aataaaactatgacatttgcaccat------ctgattcatggttggaccattgtttctc 34241386  T
Q  141 ctcactcttgctctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatcta 206  Q
    ||||||  || |||||| ||||||||||| ||||| |||||||||||||||||||||| |||||||    
T  34241385 ctcacttatgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatcta 34241320  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 34233641 - 34233547
Alignment:
Q  112 tctgattcatggttgcaccatggttcctactcactcttgctctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatcta 206  Q
    ||||||||||||||| ||||| ||| || ||||||  || |||||| ||||||||||| ||||| |||||||||||||||||||||| |||||||    
T  34233641 tctgattcatggttggaccattgtttctcctcacttatgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatcta 34233547  T

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Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 41714368 - 41714277
Alignment:
Q  115 gattcatggttgcaccatggttcctactcactcttgctctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatcta 206  Q
    |||||||||||| ||||| | |||| |||| ||||| ||||| | ||||| |||| ||||||||||||||||||||||| ||||||||||||    
T  41714368 gattcatggttgaaccattggtcctcctcattcttgttctccctgtcactattctcttaggctgaccaccaaatatcatgacaagccatcta 41714277  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 42116894 - 42116945
Alignment:
Q  43 aaaaactaacacacaatagagaaaataaccacaaacaacaataagactacgacatt 98  Q
    |||||||||||||||||||||||||||||    ||||||||||| |||| ||||||    
T  42116894 aaaaactaacacacaatagagaaaataac----aacaacaataaaactatgacatt 42116945  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 206
Target Start/End: Original strand, 11117347 - 11117473
Alignment:
Q  80 acaataagactacgacattgccaccatttgattctgattcatggttgcaccatggttcctactcactcttgctctccttttcactcttcttttaggctga 179  Q
    ||||||| |||| ||||||  |||||| ||||||||||||||| ||| ||||||    || |||||||||| ||||||| |||||||||| |||||||||    
T  11117347 acaataaaactatgacatttgcaccatctgattctgattcatgtttgaaccatgtgcgctcctcactcttgttctccttgtcactcttctcttaggctga 11117446  T
Q  180 ccaccaaatatcatcacaagccatcta 206  Q
    |||||||||||||| ||||||||||||    
T  11117447 ccaccaaatatcatgacaagccatcta 11117473  T

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Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 108 - 206
Target Start/End: Complemental strand, 25523889 - 25523791
Alignment:
Q  108 tgattctgattcatggttgcaccatggttcctactcactcttgctctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatcta 206  Q
    |||||||||||||||| || |||||| ||||| |||| |||||  ||  |||||||  |||| ||||||||||| ||||||||||||||||||||||||    
T  25523889 tgattctgattcatggctgtaccatgattcctcctcattcttgtcctttttttcacctttctcttaggctgaccgccaaatatcatcacaagccatcta 25523791  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 206
Target Start/End: Original strand, 8522341 - 8522439
Alignment:
Q  108 tgattctgattcatggttgcaccatggttcctactcactcttgctctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatcta 206  Q
    |||||||||||| || ||| ||  ||||||||  ||| |||||  || ||||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  8522341 tgattctgattcgtgattgaactttggttcctcgtcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatcta 8522439  T

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