View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6358_low_5 (Length: 325)
Name: NF6358_low_5
Description: NF6358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6358_low_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 42741467 - 42741790
Alignment:
| Q |
1 |
tgaaactatttagaagtgaattcacctcctcgaccagtcctcgtaacttttatatgctgaccacttactttcgtgacaacatctttgaacttccttgaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42741467 |
tgaaactatttagaagtgaattcacctcctcgaccagtcctcgtaacttttatatgctgaccacttcctttcgtgacaacatctttgaacttccttgaag |
42741566 |
T |
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| Q |
101 |
gtagtaaaggcatttggattaagatattacatacnnnnnnnnctttcacgagaatttctacatcaccaccaaatgagacattaattgtcacttactgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741567 |
gtagtaaaggcatttggattaagatattacatactttttt--ctttcatgagaatttttacatcaccaccaaatgagacattaattgtcacttactgatt |
42741664 |
T |
|
| Q |
201 |
catcaagatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttcc-ttaacttcattacttccac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42741665 |
catcaagatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttcctttaacttcattacttccac |
42741764 |
T |
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| Q |
300 |
atgctagcaacattgtttcaaaactt |
325 |
Q |
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| T |
42741765 |
atgctagcaacattgtttcaaaactt |
42741790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 21745587 - 21745909
Alignment:
| Q |
1 |
tgaaactatttagaagtgaattcacctcctcgaccagtcctcgtaacttttatatgctgaccacttactttcgtgacaacatctttgaacttccttgaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21745587 |
tgaaactatttagaagtgaattcacctcctcgaccagtcctcgtaacttttatatgctgaccacttcctttcgtgacaacatctttgaacttccttgaag |
21745686 |
T |
|
| Q |
101 |
gta----gtaaaggcatttggattaagatattacatacnnnnnnnnctttcacgagaatttctacatcaccaccaaatgagacattaattgtcacttact |
196 |
Q |
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||| ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
21745687 |
gtaaatagtaaaggcatttggattaagatattacatactttttt--ctttcatgagaatttttacatcaccaccaaatgagacatt----gtcacttact |
21745780 |
T |
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| Q |
197 |
gattcatcaagatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttccttaacttcattacttc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21745781 |
gattcatcaagatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttccttaacttcattacttc |
21745880 |
T |
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| Q |
297 |
cacatgctagcaacattgtttcaaaactt |
325 |
Q |
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| T |
21745881 |
cacatgctagcaacattgtttcaaaactt |
21745909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 4890685 - 4890721
Alignment:
| Q |
285 |
cttcattacttccacatgctagcaacattgtttcaaa |
321 |
Q |
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||||||||||||||| |||||||| |||||||||||| |
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| T |
4890685 |
cttcattacttccacgtgctagcagcattgtttcaaa |
4890721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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