View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6358_low_6 (Length: 310)
Name: NF6358_low_6
Description: NF6358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6358_low_6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 310
Target Start/End: Complemental strand, 983254 - 982951
Alignment:
| Q |
7 |
aggaaatttgaatgcatgaccaagacacaagatgctttaaaaagaaagacccttaaaatatcttctaccatttacatcatcaactgtttgccacataaaa |
106 |
Q |
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| T |
983254 |
aggaaatttgaatgcatgaccaagacacaagatactttaaaaagaaagacccttaaaatatcttctaccatttacatcatcaactgtttgccacataaaa |
983155 |
T |
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| Q |
107 |
tacctatatactttattttgtagcaaatgtttaaattgtactatattttttcttgtacaaacttgtactatataattaatttaccatagcagttcagttc |
206 |
Q |
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| T |
983154 |
tacctatatactttattttgtagcaaatgtttaaactgtactatattttttcttgtacaaacttgtactatattattaatttaccatagcagttcagttc |
983055 |
T |
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| Q |
207 |
acgcacgcataaactcattaatttaccataccaattcagttcacacatgtataaactcattaatgtacaatatagaacaatctcaatcagtgaacacaac |
306 |
Q |
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| T |
983054 |
atgcacgcataaactcattaatttaccataccaattcagttcacacatgtataaactcattaatgtacaatatagaacaatctcaatcagtgaacacaac |
982955 |
T |
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| Q |
307 |
atac |
310 |
Q |
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|||| |
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| T |
982954 |
atac |
982951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 40413331 - 40413224
Alignment:
| Q |
2 |
agcaaaggaaatttgaatgcatgaccaagacacaagatgctttaaaaagaaagacccttaaaatatcttctaccatttacatcatcaactgtttgccaca |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || | |
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| T |
40413331 |
agcaaaggaaatttgaatgcatgaccaagacacaagatgctttaaaaagaaataccctcgaaatatcttctaccatttacatcatcaactgtttgacata |
40413232 |
T |
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| Q |
102 |
taaaatac |
109 |
Q |
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|| ||||| |
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| T |
40413231 |
tacaatac |
40413224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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