View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6359_high_11 (Length: 239)
Name: NF6359_high_11
Description: NF6359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6359_high_11 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 54 - 239
Target Start/End: Original strand, 44467243 - 44467449
Alignment:
| Q |
54 |
gaagccatacaatttattaatatattttttaaaagagtatatagtatagtgttagcatttcatggtttagttaaatatt------------tctaatgct |
141 |
Q |
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| T |
44467243 |
gaagacatacaatttattaatatattttttaaaagagtatatagtatagtgttagcatttcatggtttagttaaatattgctcctggcctttctaatgct |
44467342 |
T |
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| Q |
142 |
cattctattctcttgaagcacaaaaacatgaaaactcttctaaccttaatcttcacattctc---------catcatcatcgttgccttcacacatgcaa |
232 |
Q |
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| T |
44467343 |
cattctattctcttgaagcacaaaaacatgaaaactcttctaaccttaatcttcacattctccatcatcatcatcatcatcgttgccttcacacatgcaa |
44467442 |
T |
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| Q |
233 |
caccaac |
239 |
Q |
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| T |
44467443 |
caccaac |
44467449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 44467186 - 44467235
Alignment:
| Q |
16 |
tttcatttaagcaaaggtattagtgattacatttccatgaagccatacaa |
65 |
Q |
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| T |
44467186 |
tttcatttatgcaaaggtattagtgattacatttccatgaagccatacaa |
44467235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 44488783 - 44488847
Alignment:
| Q |
169 |
atgaaaactcttctaaccttaatcttcacattctccatcatcatcgttgccttcacacatgcaacaccaac |
239 |
Q |
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| T |
44488783 |
atgaaaactctt---accttaatcttcacattctc---catcattgttgccttctcacatgcagcaccaac |
44488847 |
T |
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