View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6359_high_12 (Length: 239)
Name: NF6359_high_12
Description: NF6359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6359_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 51725466 - 51725673
Alignment:
| Q |
15 |
atgaataaagatcgatatgcttaaaatctgaacgttgtcatttactgttacgtactactagtatctaaaaaacccattctgtttttcaacaataataaat |
114 |
Q |
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| T |
51725466 |
atgaataaagatcgatatgcttaaaatctgaatgttgtcatttactgttacgtactactagtatctaaaaaacccattctgtttttcaacaataataaat |
51725565 |
T |
|
| Q |
115 |
tcattctgatcctttgctggatttgttgtcatcaagtgttaattagcattgaccaaagtgcggtgtgtaccctttcacacctacacaactggaagtaaca |
214 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51725566 |
tcattctgatcctttgctggctttgttgtcatcaagtgttaattagcattgaccaaagtgcggtgtgtaccctttcacacctacacaactggaagtaaca |
51725665 |
T |
|
| Q |
215 |
aggcaaac |
222 |
Q |
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|||||||| |
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| T |
51725666 |
aggcaaac |
51725673 |
T |
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