View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6359_high_14 (Length: 234)
Name: NF6359_high_14
Description: NF6359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6359_high_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 17451308 - 17451095
Alignment:
| Q |
13 |
gaggaggacaaaacaagcacaaccaaacaccttaagtaaattataatcaggtgtagtgtggtaaagatgctcaaaaggagagatattaccaaagatagat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17451308 |
gaggaggacaaaacaagcacaaccaaacaccttaagtaaattataatcaggtgtagtatggtaaagacgctcaaaaggagagatattaccaaagatagat |
17451209 |
T |
|
| Q |
113 |
gaaggaagacgattgataatgtggacagcagtaagagaagcttcaccccaagcacgttcaggacaagaggctgagataagcatggcacggacagagtcag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17451208 |
gaaggaagacgattgataatgtggacagcagtaagagaagcttcaccccaagcacgttcaggacaagaggctgagataagcatggcacggacagagtcaa |
17451109 |
T |
|
| Q |
213 |
gaatgtgatgatgt |
226 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
17451108 |
gaatgtgacgatgt |
17451095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 14826024 - 14825819
Alignment:
| Q |
20 |
acaaaacaagcacaaccaaacaccttaagtaaattataatcaggtgtagtg--------tggtaaagatgctcaaaaggagagatattaccaaagataga |
111 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||| ||||| ||||||||| || || ||| ||||||| || |||| |||||||| || ||| |
|
|
| T |
14826024 |
acaaaacaagcacaatcaaacaccttaagtgaattgtaatctggtgtagtggtgtagtgtgatatagacgctcaaagggtgagacattaccaaggacaga |
14825925 |
T |
|
| Q |
112 |
tgaaggaagacgattgataatgtggacagcagtaagagaagcttcaccccaagcacgttcaggacaagaggctgagataagcatggcacggacagagtca |
211 |
Q |
| |
|
||| ||||||||||| |||||||||||| |||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
14825924 |
tgagggaagacgattaataatgtggacaacagttagacatgcttcacaccaagcacgttcaggacaagaggctgagataagcatggcacgaacagaatca |
14825825 |
T |
|
| Q |
212 |
ggaatg |
217 |
Q |
| |
|
||||| |
|
|
| T |
14825824 |
agaatg |
14825819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 5241786 - 5241965
Alignment:
| Q |
14 |
aggaggacaaaacaagcacaaccaaacaccttaagtaaattataatcaggtgtagtgtggtaaagatgctcaaaaggagagatattaccaaagatagatg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||| | |||||||||||||||||||||| |||||||| | || | |
|
|
| T |
5241786 |
aggaggacaaaacaagcacaaccaaacaccttgagtgatttataatctggtgtagtgagataaagatgctcaaaaggagagacgttaccaaatacagcgg |
5241885 |
T |
|
| Q |
114 |
aaggaagacgattgataatgtggacagcagtaagagaagcttcaccccaagcacgttcaggacaagaggctgagataagc |
193 |
Q |
| |
|
|||| |||| || || || |||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
5241886 |
aagggagacagtttatcatatggacagcggtaagagcagcttcaccccaagcgcgttttggacaagaggctgagataagc |
5241965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 24432259 - 24432046
Alignment:
| Q |
13 |
gaggaggacaaaacaagcacaaccaaacaccttaagtaaattataatcaggtgtagtgtggtaaagatgctcaaaaggagagatattaccaaagatagat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24432259 |
gaggaggacaaaacaagcacaaccaaacaccttaagtaaattataatcaggtgtagtatggtaaagacgctcaaaaggagagatattaccaaagatagat |
24432160 |
T |
|
| Q |
113 |
gaaggaagacgattgataatgtggacagcagtaagagaagcttcaccccaagcacgttcaggacaagaggctgagataagcatggcacggacagagtcag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24432159 |
gaaggaagacgattgataatgtggacagcagtaagagaagcttcaccccaagcacgttcaggacaagaggctgagataagcatggcacggacaaagtcaa |
24432060 |
T |
|
| Q |
213 |
gaatgtgatgatgt |
226 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
24432059 |
gaatgtgacgatgt |
24432046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 29991115 - 29990904
Alignment:
| Q |
14 |
aggaggacaaaacaagcacaaccaaacaccttaagtaaattataatcaggtgtagtgtggtaaagatgctcaaaaggagagatattaccaaagatagatg |
113 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| | |||||||| ||||||||| | |||||| ||||||||||||||| |||||||| || | | |
|
|
| T |
29991115 |
aggaggacaaaacacgcacaaccaaacaccttaagtgatttataatctggtgtagtgagataaagacgctcaaaaggagagacattaccaaggacataat |
29991016 |
T |
|
| Q |
114 |
aaggaagacgattgataatgtggacagcagtaagagaagcttcaccccaagcacgttcaggacaagaggctgagataagcatggcacggacagagtcagg |
213 |
Q |
| |
|
|||| ||| ||||||| || |||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||| ||| ||| |||||| | |
|
|
| T |
29991015 |
aagggagatgattgattatatggacagcagtaagagcagcttcaccccaagcacgttctggacaagaggccgagataagcatgacacagactgagtcaag |
29990916 |
T |
|
| Q |
214 |
aatgtgatgatg |
225 |
Q |
| |
|
||||| |||||| |
|
|
| T |
29990915 |
aatgtaatgatg |
29990904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 16503151 - 16502950
Alignment:
| Q |
17 |
aggacaaaacaagcacaaccaaacaccttaagtaaattataatcaggtgtagtgtggtaaagatgctcaaaaggagagatattaccaaagatagatgaag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||| |||||||| |||||| ||||||||||||||| |||||||| || ||| |||| |
|
|
| T |
16503151 |
aggacaaaacaagcacaaccaaacaccttaagtgagttataatcttgtgtagtgaaataaagacgctcaaaaggagagacattaccaaggacagaggaag |
16503052 |
T |
|
| Q |
117 |
gaagacgattgataatgtggacagcagtaagagaagcttcaccccaagcacgttcaggacaagaggctgagataagcatggcacggacagagtcaggaat |
216 |
Q |
| |
|
|| |||||||| || |||||||| ||||||| |||||||||||||| ||||| | ||| |||||||||||| ||||||||| ||| |||||| |||| |
|
|
| T |
16503051 |
agaggcgattgattatatggacagcggtaagagcggcttcaccccaagcgcgttctgaacatgaggctgagatatgcatggcacagactgagtcaagaat |
16502952 |
T |
|
| Q |
217 |
gt |
218 |
Q |
| |
|
|| |
|
|
| T |
16502951 |
gt |
16502950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 53017059 - 53017270
Alignment:
| Q |
14 |
aggaggacaaaacaagcacaaccaaacaccttaagtaaattataatcaggtgtagtgtggtaaagatgctcaaaaggagagatattaccaaagatagatg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||| ||||||||| | |||||| ||||||||||||||| |||||||| || ||| | |
|
|
| T |
53017059 |
aggaggacaaaacaagcacaaccaaacaccttaagtgagttataatttggtgtagtgagataaagacgctcaaaaggagagacattaccaaggacagagg |
53017158 |
T |
|
| Q |
114 |
aaggaagacgattgataatgtggacagcagtaagagaagcttcaccccaagcacgttcaggacaagaggctgagataagcatggcacggacagagtcagg |
213 |
Q |
| |
|
|||| ||||||||||| || ||||| || ||||||| |||||| ||||||| |||| ||||| |||||||||||||||||||||||||| |||||| | |
|
|
| T |
53017159 |
aagggagacgattgattatatggactgcggtaagagcggcttcatcccaagcgtgttctggacacgaggctgagataagcatggcacggactgagtcaag |
53017258 |
T |
|
| Q |
214 |
aatgtgatgatg |
225 |
Q |
| |
|
||||||| |||| |
|
|
| T |
53017259 |
aatgtgacgatg |
53017270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 20669989 - 20670201
Alignment:
| Q |
14 |
aggaggacaaaacaagcacaaccaaacaccttaagtaaattataatcaggtgtagtgtggtaaagatgctcaaaaggagagatattaccaaagatagatg |
113 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||| | |||||||| ||||||||| | ||||| | |||||| ||||||| |||||||| || ||| | |
|
|
| T |
20669989 |
aggaggacaaaacaatcacaacaaaacaccttaagtgatttataatccggtgtagtgagataaagtttctcaaagggagagacattaccaaggacagagg |
20670088 |
T |
|
| Q |
114 |
aaggaagacgattgataatgtggacagcagtaagagaagcttca-ccccaagcacgttcaggacaagaggctgagataagcatggcacggacagagtcag |
212 |
Q |
| |
|
|||| |||| |||||| || |||| || |||||||| | ||||| |||||||||||||| ||||||||||||| |||||||||| |||| | |||||| |
|
|
| T |
20670089 |
aagggagacaattgattatatggatagtagtaagagcatcttcacccccaagcacgttctggacaagaggctgggataagcatgacacgaattgagtcaa |
20670188 |
T |
|
| Q |
213 |
gaatgtgatgatg |
225 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
20670189 |
gaatgtgacgatg |
20670201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 12544623 - 12544413
Alignment:
| Q |
14 |
aggaggacaaaacaagcacaaccaaacaccttaagtaaattataatcaggtgtagtgtggtaaagatgctcaaaaggagagatattaccaaagatagatg |
113 |
Q |
| |
|
||||||||||||||| ||||||||||| || || ||| ||||||| ||||||||| | || || || |||||||||||| |||||||| || ||| | |
|
|
| T |
12544623 |
aggaggacaaaacaatcacaaccaaactccatatataagttataatttggtgtagtgagatatagccgcccaaaaggagagacattaccaaggacagagg |
12544524 |
T |
|
| Q |
114 |
aaggaagacgattgataatgtggacagcagtaagagaagcttcaccccaagcacgttcaggacaagaggctgagataagcatggcacggacagagtcagg |
213 |
Q |
| |
|
|||| ||| ||||||| || || ||| ||||||||| |||||| ||| || | || |||||||| ||||| ||||||||||||||||| |||||| | |
|
|
| T |
12544523 |
aagggagatgattgattatatgaacaacagtaagagcggcttca-ccctagtgtgatctggacaagatgctgaaataagcatggcacggactgagtcaag |
12544425 |
T |
|
| Q |
214 |
aatgtgatgatg |
225 |
Q |
| |
|
||||||| |||| |
|
|
| T |
12544424 |
aatgtgacgatg |
12544413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University