View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6359_high_15 (Length: 215)
Name: NF6359_high_15
Description: NF6359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6359_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 3249253 - 3249072
Alignment:
| Q |
17 |
agggcactgatttgatgcataaagaaactgctgagcctgtgaactcccctgttaagattttcgaccttgaaacaaccaatactaaaaatacacattctga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3249253 |
agggcactgatttgatgcataaagaaactgctgagcctgtgaactcccctgttaagattttcgaccttgaaacaaccaatactaaaaatacacattctga |
3249154 |
T |
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| Q |
117 |
acaggctgctactgaactacacaacataaccaactcccctgatttccatttacgacttggaagcttgaatgaactacatgac |
198 |
Q |
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| T |
3249153 |
acaggctgctactgaactacacaacataaccaactcccctgatttccatttacgacttggaagcttgaatgaactacatgac |
3249072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 23 - 195
Target Start/End: Original strand, 36905383 - 36905555
Alignment:
| Q |
23 |
ctgatttgatgcataaagaaactgctgagcctgtgaactcccctgttaagattttcgaccttgaaacaaccaatactaaaaatacacattctgaacaggc |
122 |
Q |
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||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||| ||| ||||||| |
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| T |
36905383 |
ctgatttgatgcataaagatattgctgagtttgtgaactcccctgttaagattttcgaccttgaaaccaccaatactgaaaatgcacaatctaaacaggc |
36905482 |
T |
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| Q |
123 |
tgctactgaactacacaacataaccaactcccctgatttccatttacgacttggaagcttgaatgaactacat |
195 |
Q |
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| T |
36905483 |
tgctactgaactacacaacataaccaattcctctgattctcatttacgtcttggaagcttgaatgacctacat |
36905555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 28102620 - 28102445
Alignment:
| Q |
23 |
ctgatttgatgcataaagaaactgctgagcctgtgaactcccctgttaagattttcgaccttgaaacaaccaatactaaaaatacacattctgaacaggc |
122 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||||||||| |
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| T |
28102620 |
ctgatttgatgcataaagaaactgatgagcatgtgaactcccctgttaagattttcgaccttgaaaccaccaataatgaaaatacacaatctgaacaggc |
28102521 |
T |
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| Q |
123 |
tgctactgaactacacaacataaccaactcccctgatttccatttacgacttggaagcttgaatgaactacatgac |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
28102520 |
tgctactgaactacacaacataaccaactcccctgattctcatttacgacttggaagcttgaatgacctacatgac |
28102445 |
T |
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