View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6359_high_2 (Length: 532)

Name: NF6359_high_2
Description: NF6359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6359_high_2
NF6359_high_2
[»] chr2 (7 HSPs)
chr2 (18-516)||(38475550-38476039)
chr2 (368-448)||(38469909-38469989)
chr2 (68-174)||(18569435-18569542)
chr2 (69-114)||(38434185-38434230)
chr2 (65-94)||(11927237-11927266)
chr2 (88-144)||(19338525-19338581)
chr2 (83-147)||(45071579-45071643)
[»] scaffold0350 (1 HSPs)
scaffold0350 (82-172)||(4475-4565)
[»] chr8 (7 HSPs)
chr8 (82-172)||(6035018-6035108)
chr8 (68-140)||(11501486-11501558)
chr8 (82-146)||(29749265-29749329)
chr8 (68-135)||(42822640-42822707)
chr8 (68-134)||(7108228-7108294)
chr8 (47-100)||(5744510-5744563)
chr8 (60-124)||(18899928-18899992)
[»] scaffold0223 (1 HSPs)
scaffold0223 (71-127)||(10620-10676)
[»] chr5 (6 HSPs)
chr5 (65-176)||(40877062-40877171)
chr5 (70-140)||(37707325-37707395)
chr5 (47-100)||(13510220-13510273)
chr5 (47-100)||(21780918-21780971)
chr5 (48-100)||(4272855-4272907)
chr5 (64-108)||(17124797-17124841)
[»] chr1 (9 HSPs)
chr1 (368-448)||(1534838-1534918)
chr1 (368-448)||(17753048-17753128)
chr1 (47-99)||(30048536-30048588)
chr1 (73-144)||(8856799-8856870)
chr1 (83-174)||(6025924-6026015)
chr1 (18-138)||(17753296-17753420)
chr1 (47-133)||(52195626-52195712)
chr1 (71-171)||(15255160-15255260)
chr1 (68-100)||(46982862-46982894)
[»] chr6 (7 HSPs)
chr6 (75-197)||(2732929-2733051)
chr6 (65-99)||(8600774-8600808)
chr6 (68-100)||(507844-507876)
chr6 (68-179)||(6012257-6012369)
chr6 (117-145)||(14932978-14933006)
chr6 (69-97)||(20869924-20869952)
chr6 (50-94)||(25207421-25207465)
[»] chr3 (5 HSPs)
chr3 (65-195)||(1813265-1813394)
chr3 (70-147)||(2082043-2082120)
chr3 (64-99)||(5033422-5033457)
chr3 (119-187)||(43381179-43381247)
chr3 (120-180)||(50402644-50402704)
[»] chr7 (5 HSPs)
chr7 (72-176)||(19130167-19130272)
chr7 (47-180)||(23117277-23117410)
chr7 (71-115)||(22607575-22607619)
chr7 (70-106)||(34925272-34925308)
chr7 (60-180)||(30900043-30900163)
[»] scaffold1528 (1 HSPs)
scaffold1528 (18-138)||(20-144)
[»] scaffold0248 (1 HSPs)
scaffold0248 (18-138)||(13510-13634)
[»] chr4 (2 HSPs)
chr4 (69-103)||(27456321-27456355)
chr4 (71-99)||(34222366-34222394)


Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 516
Target Start/End: Complemental strand, 38476039 - 38475550
Alignment:
Q  18 agagttattggaaggtatagaaatttgggcagtgttgtcgaatgcaaattgcggaaaatagcagtttgttcaaattctgctatactacagtactataatg 117  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  38476039 agagttattggaaggtatagaaatttgggcagtgttgttgaatgcaaattgcggaaaatagcagtttgttcaaattctcctatactacactactataatg 38475940  T
Q  118 ccgctatagctactatttaacaacactttgacctacatagcatatcgcggaacaatagcgattgattcaagttccactacaatatagaaaactgaacttg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38475939 ccgctatagctactatttaacaacactttgacctacatagcatatcgcggaacaatagcgattgattcaagttccactacaatatagaaaactgaacttg 38475840  T
Q  218 ggtgatgtattgtaccctaacactaggtcgttcactttacactaactgcaactcaattttgaacactgaaaatcaatcctcgcctaaccaagaacctttt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  38475839 ggtgatgtattgtaccctaacactaggtcgttcactttacactaactgcaactcaattttgaacactgaaaatcaatccacgcctaaccaagaacc-ttt 38475741  T
Q  318 aatcagacccatatctgtgttaaaaacattgaaggtgcctatgtcctactatatctatagtctatctttaatcatctgataacctttaagtgcataacaa 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  38475740 aatcagacccatatctgtgttaaaaacattgaaggtgcctatgtcctactatatctatagtctatctttattcatctgataacctttaagtgcataacta 38475641  T
Q  418 attacactttgaagcacattcagctgtaaaaaatttctaaatcttttcttataaaagccatgcagaaaacagacagataaatcaaaccatggtaccaag 516  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  38475640 attacactttgaagcacattcagctgtaa--------taaatcttttcttataaaagacatgcagaaaacagacaaataaatcaaaccatggtaccaag 38475550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 448
Target Start/End: Complemental strand, 38469989 - 38469909
Alignment:
Q  368 atatctatagtctatctttaatcatctgataacctttaagtgcataacaaattacactttgaagcacattcagctgtaaaa 448  Q
    ||||||||| ||||  |||||||||||||||  ||| |||||  |||| ||| |||||||||||||||||||| |||||||    
T  38469989 atatctatactctacgtttaatcatctgatattcttcaagtgtgtaactaataacactttgaagcacattcaggtgtaaaa 38469909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 68 - 174
Target Start/End: Complemental strand, 18569542 - 18569435
Alignment:
Q  68 gcggaaaatagcagtttgttcaaattctgctatactacagtacta-taatgccgctatagctactatttaacaacactttgacctacatagcatatcgcg 166  Q
    |||| ||||||| ||||||||||||||||||| |||||||| ||| | ||| | |||||||  |||||| ||||||||||   ||| |||||||||| |     
T  18569542 gcgggaaatagcggtttgttcaaattctgctacactacagtgctatttatgtctctatagcggctatttgacaacactttatactaaatagcatatcaca 18569443  T
Q  167 gaacaata 174  Q
    ||||||||    
T  18569442 gaacaata 18569435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 38434230 - 38434185
Alignment:
Q  69 cggaaaatagcagtttgttcaaattctgctatactacagtactata 114  Q
    ||||||||||||||||||||||||||||||||  |||||| |||||    
T  38434230 cggaaaatagcagtttgttcaaattctgctatgttacagtgctata 38434185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 94
Target Start/End: Complemental strand, 11927266 - 11927237
Alignment:
Q  65 attgcggaaaatagcagtttgttcaaattc 94  Q
    ||||||||||||||||||||||||||||||    
T  11927266 attgcggaaaatagcagtttgttcaaattc 11927237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 19338525 - 19338581
Alignment:
Q  88 caaattctgctatactacagtactataatgccgctatagctactatttaacaacact 144  Q
    |||||||||||||  || ||  |||||||||| |||||||| |||||||||||||||    
T  19338525 caaattctgctatgttatagcgctataatgccactatagctgctatttaacaacact 19338581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 45071579 - 45071643
Alignment:
Q  83 ttgttcaaattctgctatactacagtactataatgccgctatagctactatttaacaacactttg 147  Q
    |||||||||||||||||| ||||||| || ||   | ||||||||| |||||| |||||||||||    
T  45071579 ttgttcaaattctgctatgctacagtgctgtagcactgctatagctgctatttgacaacactttg 45071643  T

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Target: scaffold0350 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 4475 - 4565
Alignment:
Q  82 tttgttcaaattctgctatactacagtactataatgccgctatagctactatttaacaacactttgacctacatagcatatcgcggaacaa 172  Q
    |||||||||||| |||||| ||||| | |||||| |||| ||||||| |||||| |||||||| | ||||| |||||||||| ||||||||    
T  4475 tttgttcaaattttgctatgctacaatgctataacgccgatatagctgctatttgacaacactctaacctaaatagcatatcacggaacaa 4565  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 6035108 - 6035018
Alignment:
Q  82 tttgttcaaattctgctatactacagtactataatgccgctatagctactatttaacaacactttgacctacatagcatatcgcggaacaa 172  Q
    |||||||||||| |||||| ||||| | |||||| |||| ||||||| |||||| |||||||| | ||||| |||||||||| ||||||||    
T  6035108 tttgttcaaattttgctatgctacaatgctataacgccgatatagctgctatttgacaacactctaacctaaatagcatatcacggaacaa 6035018  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 11501486 - 11501558
Alignment:
Q  68 gcggaaaatagcagtttgttcaaattctgctatactacagtactataatgccgctatagctactatttaacaa 140  Q
    |||||||||| ||||||||||||||||  |||| ||| ||| |||||||||  ||||||| ||||||| ||||    
T  11501486 gcggaaaataacagtttgttcaaattccactatgctagagtgctataatgctactatagccactatttgacaa 11501558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 29749329 - 29749265
Alignment:
Q  82 tttgttcaaattctgctatactacagtactataatgccgctatagctactatttaacaacacttt 146  Q
    |||||||||||| |||||| ||||||| |||||  || |||||| || |||||||||||||||||    
T  29749329 tttgttcaaattttgctatgctacagtgctatagcgctgctataactgctatttaacaacacttt 29749265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 42822707 - 42822640
Alignment:
Q  68 gcggaaaatagcagtttgttcaaattctgctatactacagtactataatgccgctatagctactattt 135  Q
    |||||||||| ||||||||||||||||  |||| | ||||| |||||  ||||||||||| |||||||    
T  42822707 gcggaaaatatcagtttgttcaaattccactatgcaacagtgctatagcgccgctatagccactattt 42822640  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 7108294 - 7108228
Alignment:
Q  68 gcggaaaatagcagtttgttcaaattctgctatactacagtactataatgccgctatagctactatt 134  Q
    |||||||||||||||||||||||||||| |||| | ||  | ||||| |||| ||||||| ||||||    
T  7108294 gcggaaaatagcagtttgttcaaattctactatgcaacgatgctatagtgccactatagcaactatt 7108228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 5744563 - 5744510
Alignment:
Q  47 cagtgttgtcgaatgcaaattgcggaaaatagcagtttgttcaaattctgctat 100  Q
    |||||||| | | |||| ||||| ||||||| ||||||||||||||||||||||    
T  5744563 cagtgttgccaattgcagattgcagaaaataacagtttgttcaaattctgctat 5744510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 18899928 - 18899992
Alignment:
Q  60 tgcaaattgcggaaaatagcagtttgttcaaattctgctatactacagtactataatgccgctat 124  Q
    ||||||| || |||||||| ||||||||||||||| |||| || ||||| ||||| |||| ||||    
T  18899928 tgcaaatcgcagaaaatagtagtttgttcaaattccgctacacaacagtgctatattgcctctat 18899992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 10620 - 10676
Alignment:
Q  71 gaaaatagcagtttgttcaaattctgctatactacagtactataatgccgctatagc 127  Q
    ||||||||| |||||||||||||||||||| | |||||| ||||||||| |||||||    
T  10620 gaaaatagcggtttgttcaaattctgctatgcaacagtattataatgcctctatagc 10676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 176
Target Start/End: Original strand, 40877062 - 40877171
Alignment:
Q  65 attgcggaaaatagcagtttgttcaaattctgctatactacagtactataatgccgctatagctactatttaacaacactttgacctacatagcatatcg 164  Q
    ||||| |||||||| ||||||||||||||||||| | ||| ||| ||||||  |  ||||||| |||||||||||||||||||  ||| |  ||||||||    
T  40877062 attgcagaaaatagtagtttgttcaaattctgctttgctatagtgctataa--ctcctatagccactatttaacaacactttgtactaaaccgcatatcg 40877159  T
Q  165 cggaacaatagc 176  Q
      ||||||||||    
T  40877160 gagaacaatagc 40877171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 37707325 - 37707395
Alignment:
Q  70 ggaaaatagcagtttgttcaaattctgctatactacagtactataatgccgctatagctactatttaacaa 140  Q
    |||||||| || ||||||||||||||||||  ||||| | |||||||| | ||| ||| ||||||||||||    
T  37707325 ggaaaataacactttgttcaaattctgctaagctacaatgctataatggcactagagccactatttaacaa 37707395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 13510220 - 13510273
Alignment:
Q  47 cagtgttgtcgaatgcaaattgcggaaaatagcagtttgttcaaattctgctat 100  Q
    |||||||||| || ||| || || |||||||||||||||||||||||| |||||    
T  13510220 cagtgttgtcaaacgcagatggcagaaaatagcagtttgttcaaattcagctat 13510273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 21780971 - 21780918
Alignment:
Q  47 cagtgttgtcgaatgcaaattgcggaaaatagcagtttgttcaaattctgctat 100  Q
    |||||||||| || ||  ||||| |||||||||||||||||||||||| |||||    
T  21780971 cagtgttgtcaaacgcggattgcagaaaatagcagtttgttcaaattcagctat 21780918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 4272907 - 4272855
Alignment:
Q  48 agtgttgtcgaatgcaaattgcggaaaatagcagtttgttcaaattctgctat 100  Q
    ||||||||| | |||| | ||||||||||| |||||||||||||||| |||||    
T  4272907 agtgttgtccattgcagactgcggaaaataacagtttgttcaaattccgctat 4272855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 17124797 - 17124841
Alignment:
Q  64 aattgcggaaaatagcagtttgttcaaattctgctatactacagt 108  Q
    |||||||||||| ||||||||||||||||||  |||| |||||||    
T  17124797 aattgcggaaaagagcagtttgttcaaattccactatgctacagt 17124841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 448
Target Start/End: Complemental strand, 1534918 - 1534838
Alignment:
Q  368 atatctatagtctatctttaatcatctgataacctttaagtgcataacaaattacactttgaagcacattcagctgtaaaa 448  Q
    ||||||||| ||||  |||||||||||||||  ||| |||||  |||| ||| |||||||||||||||||||| |||||||    
T  1534918 atatctatactctacgtttaatcatctgatattcttcaagtgtgtaactaataacactttgaagcacattcaggtgtaaaa 1534838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 448
Target Start/End: Complemental strand, 17753128 - 17753048
Alignment:
Q  368 atatctatagtctatctttaatcatctgataacctttaagtgcataacaaattacactttgaagcacattcagctgtaaaa 448  Q
    ||||||||| ||||  |||||||||||||||  ||| |||||  |||| ||| |||||||||||||||||||| |||||||    
T  17753128 atatctatactctacgtttaatcatctgatattcttcaagtgtgtaactaataacactttgaagcacattcaggtgtaaaa 17753048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 30048536 - 30048588
Alignment:
Q  47 cagtgttgtcgaatgcaaattgcggaaaatagcagtttgttcaaattctgcta 99  Q
    |||||||||||| ||||||||| |||||||| |||||||||||||||| ||||    
T  30048536 cagtgttgtcgattgcaaattgtggaaaataacagtttgttcaaattccgcta 30048588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 8856870 - 8856799
Alignment:
Q  73 aaatagcagtttgttcaaattctgctatactacagtactataatgccgctatagctactatttaacaacact 144  Q
    ||||||| ||||||||||||||  ||| | |||||| ||||| ||||||||||||| |||||| ||||||||    
T  8856870 aaatagcggtttgttcaaattccactacaatacagtgctatagtgccgctatagcttctatttgacaacact 8856799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 6025924 - 6026015
Alignment:
Q  83 ttgttcaaattctgctatactacagtactataatgccgctatagctactatttaacaacactttgacctacatagcatatcgcggaacaata 174  Q
    ||||| ||||||||||   | ||||| |||||  || |||||||| ||||||| |||||| ||||  ||| |||||||||||||||||||||    
T  6025924 ttgttaaaattctgctgcccaacagtgctatagcgctgctatagccactatttgacaacattttgtactaaatagcatatcgcggaacaata 6026015  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 17753420 - 17753296
Alignment:
Q  18 agagttattggaaggtatagaaatttgggcagtgttgtcgaatgcaaattgcg-gaaaatagcagtttgttcaaattctgctatactacagtactata-- 114  Q
    |||||||||||||| ||||| |||||| |||||| |||| || |  |||||||  |||||||| || | ||||||||||||||| || |  |||||||      
T  17753420 agagttattggaagatataggaatttgagcagtgctgtcaaaagtgaattgcgaaaaaatagctgtctattcaaattctgctatgctgccatactatagt 17753321  T
Q  115 -atgccgctatagctactatttaac 138  Q
      |||||||||||| ||||||||||    
T  17753320 gctgccgctatagcaactatttaac 17753296  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 52195712 - 52195626
Alignment:
Q  47 cagtgttgtcgaatgcaaattgcggaaaatagcagtttgttcaaattctgctatactacagtactataatgccgctatagctactat 133  Q
    |||||||||| | ||| ||| |||||||||| | ||||||| ||||||| ||| || ||||| |||||  |||||||||||| ||||    
T  52195712 cagtgttgtcaattgcgaatagcggaaaataacggtttgttaaaattctactacacgacagtgctatagcgccgctatagctgctat 52195626  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 171
Target Start/End: Original strand, 15255160 - 15255260
Alignment:
Q  71 gaaaatagcagtttgttcaaattctgctatactacagtactataatgccgctatagctactatttaacaacactttgacctacatagcatatcgcggaac 170  Q
    ||||||||  ||||||| |||||||||||| | ||| | ||||| |||||||||||| ||| ||| |||| | | ||  ||| |||||||||| ||||||    
T  15255160 gaaaatagtggtttgtttaaattctgctatgcaacattgctatagtgccgctatagccactgtttcacaatattatgcactaaatagcatatcacggaac 15255259  T
Q  171 a 171  Q
    |    
T  15255260 a 15255260  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 46982894 - 46982862
Alignment:
Q  68 gcggaaaatagcagtttgttcaaattctgctat 100  Q
    |||||||||||||||||||||||||| ||||||    
T  46982894 gcggaaaatagcagtttgttcaaattttgctat 46982862  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 197
Target Start/End: Complemental strand, 2733051 - 2732929
Alignment:
Q  75 atagcagtttgttcaaattctgctatactacagtactataatgccgctatagctactatttaacaacactttgacctacatagcatatcgcggaacaata 174  Q
    |||| ||||||||  ||||| ||||||| | |||| ||||  ||| |||||||| |||||| |||||| ||||  ||| ||||||||||||  |||||||    
T  2733051 atagtagtttgtttgaattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaata 2732952  T
Q  175 gcgattgattcaagttccactac 197  Q
    ||||||  ||||| || ||||||    
T  2732951 gcgatttgttcaaatttcactac 2732929  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 99
Target Start/End: Complemental strand, 8600808 - 8600774
Alignment:
Q  65 attgcggaaaatagcagtttgttcaaattctgcta 99  Q
    |||||||||||||||||||||||||||||||||||    
T  8600808 attgcggaaaatagcagtttgttcaaattctgcta 8600774  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 507876 - 507844
Alignment:
Q  68 gcggaaaatagcagtttgttcaaattctgctat 100  Q
    |||||||||||||||||||| ||||||||||||    
T  507876 gcggaaaatagcagtttgtttaaattctgctat 507844  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 6012369 - 6012257
Alignment:
Q  68 gcggaaaatagca-gtttgttcaaattctgctatactacagtactataatgccgctatagctactatttaacaacactttgacctacatagcatatcgcg 166  Q
    ||||||||||||  |||| ||||||||||||||  | ||||| ||| || ||||||| |||| |||||| |||||| ||||| ||| ||||  |||| |     
T  6012369 gcggaaaatagcgcgtttattcaaattctgctacgcaacagttctacaacgccgctaaagctgctatttgacaacagtttgaactaaatagagtatcaca 6012270  T
Q  167 gaacaatagcgat 179  Q
    || ||||||||||    
T  6012269 gagcaatagcgat 6012257  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 145
Target Start/End: Complemental strand, 14933006 - 14932978
Alignment:
Q  117 gccgctatagctactatttaacaacactt 145  Q
    |||||||||||||||||||||||||||||    
T  14933006 gccgctatagctactatttaacaacactt 14932978  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 97
Target Start/End: Original strand, 20869924 - 20869952
Alignment:
Q  69 cggaaaatagcagtttgttcaaattctgc 97  Q
    |||||||||||||||||||||||||||||    
T  20869924 cggaaaatagcagtttgttcaaattctgc 20869952  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 25207421 - 25207465
Alignment:
Q  50 tgttgtcgaatgcaaattgcggaaaatagcagtttgttcaaattc 94  Q
    |||||||||  ||| ||||||||||||| ||||||||||||||||    
T  25207421 tgttgtcgatcgcagattgcggaaaataacagtttgttcaaattc 25207465  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 195
Target Start/End: Complemental strand, 1813394 - 1813265
Alignment:
Q  65 attgcggaaaatagcagtttgttcaaattctgctatactacagtactataatgccgctatagctactatttaacaacactttgacctacatagcatatcg 164  Q
    |||| |||||||||  |||||  ||||||  |||| | ||||||  |||| |||||||||||| ||||||| ||||||||| |  ||| || ||||||||    
T  1813394 attggggaaaatagtggtttgcacaaatttcgctacagtacagtgttatagtgccgctatagccactatttgacaacacttcgtgcta-atggcatatcg 1813296  T
Q  165 cggaacaatagcgattgattcaagttccact 195  Q
    ||||||||||| ||||  ||||| |||||||    
T  1813295 cggaacaatagtgatttgttcaaattccact 1813265  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 2082120 - 2082043
Alignment:
Q  70 ggaaaatagcagtttgttcaaattctgctatactacagtactataatgccgctatagctactatttaacaacactttg 147  Q
    |||||||||| ||||||||||||||||||| ||||| || ||||| ||| ||| |||| |||||| ||| ||| ||||    
T  2082120 ggaaaatagcggtttgttcaaattctgctacactactgtgctatagtgctgctttagccactattgaactacaatttg 2082043  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 5033457 - 5033422
Alignment:
Q  64 aattgcggaaaatagcagtttgttcaaattctgcta 99  Q
    ||||||||||||||||||||||||||||||| ||||    
T  5033457 aattgcggaaaatagcagtttgttcaaattccgcta 5033422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 43381247 - 43381179
Alignment:
Q  119 cgctatagctactatttaacaacactttgacctacatagcatatcgcggaacaatagcgattgattcaa 187  Q
    |||||||||| |||||| |||||| ||||   || || ||||||||||||| |||||||||| ||||||    
T  43381247 cgctatagcttctatttgacaacattttgtattaaattgcatatcgcggaataatagcgatttattcaa 43381179  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 50402644 - 50402704
Alignment:
Q  120 gctatagctactatttaacaacactttgacctacatagcatatcgcggaacaatagcgatt 180  Q
    ||||||||| |||||| ||||||||||   ||| ||||||||| |||||||||||| ||||    
T  50402644 gctatagctgctatttgacaacactttatactaaatagcatattgcggaacaatagtgatt 50402704  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 19130167 - 19130272
Alignment:
Q  72 aaaatagcagtttgttcaaattctgctatactacagtactataatgccgctat-agctactatttaacaacactttgacctacatagcatatcgcggaac 170  Q
    ||||||| |||||||||||| |||||||| ||| ||| |||||||| |||| | | ||| ||||| |||||||||||  ||| ||||| ||| | |||||    
T  19130167 aaaataggagtttgttcaaaatctgctatgctatagtgctataatgtcgctgtaacctattatttgacaacactttgtactaaatagcgtattgtggaac 19130266  T
Q  171 aatagc 176  Q
    ||||||    
T  19130267 aatagc 19130272  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 47 - 180
Target Start/End: Original strand, 23117277 - 23117410
Alignment:
Q  47 cagtgttgtcgaatgcaaattgcggaaaatagcagtttgttcaaattctgctatactacagtactataatgccgctatagctactatttaacaacacttt 146  Q
    |||||||||| | |||  ||||||||||||||  |||||||||||||| ||||    ||||| |||||  || |||||| | ||||||| |||||| |||    
T  23117277 cagtgttgtcaattgcggattgcggaaaatagtggtttgttcaaattccgctacgtgacagtgctatagcgctgctatacccactatttcacaacatttt 23117376  T
Q  147 gacctacatagcatatcgcggaacaatagcgatt 180  Q
    |  ||| ||||||||||  |||| ||||||||||    
T  23117377 gtgctaaatagcatatcatggaaaaatagcgatt 23117410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 22607619 - 22607575
Alignment:
Q  71 gaaaatagcagtttgttcaaattctgctatactacagtactataa 115  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||||    
T  22607619 gaaaatagcggtttcttcaaattctgctatactacagtgctataa 22607575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 34925272 - 34925308
Alignment:
Q  70 ggaaaatagcagtttgttcaaattctgctatactaca 106  Q
    ||||||||||||||||||||||||||||||| |||||    
T  34925272 ggaaaatagcagtttgttcaaattctgctatgctaca 34925308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 180
Target Start/End: Original strand, 30900043 - 30900163
Alignment:
Q  60 tgcaaattgcggaaaatagcagtttgttcaaattctgctatactacagtactataatgccgctatagctactatttaacaacactttgacctacatagca 159  Q
    |||| ||||| ||||||||  ||||| |||||||| |||||   |||||||||||   |||| ||||| ||||||| |||| | ||||  ||| ||||      
T  30900043 tgcagattgcagaaaatagtggtttgctcaaattccgctatgtaacagtactatagcaccgcgatagccactatttcacaatattttgtactaaatagtg 30900142  T
Q  160 tatcgcggaacaatagcgatt 180  Q
    |||||| ||||||||||||||    
T  30900143 tatcgctgaacaatagcgatt 30900163  T

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Target: scaffold1528 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 144 - 20
Alignment:
Q  18 agagttattggaaggtatagaaatttgggcagtgttgtcgaatgcaaattgcg-gaaaatagcagtttgttcaaattctgctatactacagtactata-- 114  Q
    |||||||||||||| ||||| |||||| |||||| |||| || |  |||||||  |||||||| || | ||||||||||||||| || |  |||||||      
T  144 agagttattggaagatataggaatttgagcagtgctgtcaaaagtgaattgcgaaaaaatagctgtctattcaaattctgctatgctgccatactatagt 45  T
Q  115 -atgccgctatagctactatttaac 138  Q
      |||||||||||| ||||||||||    
T  44 gctgccgctatagcaactatttaac 20  T

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Target: scaffold0248 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 13510 - 13634
Alignment:
Q  18 agagttattggaaggtatagaaatttgggcagtgttgtcgaatgcaaattgcg-gaaaatagcagtttgttcaaattctgctatactacagtactata-- 114  Q
    |||||||||||||| ||||| |||||| |||||| |||| || |  |||||||  |||||||| || | ||||||||||||||| || |  |||||||      
T  13510 agagttattggaagatataggaatttgagcagtgctgtcaaaagtgaattgcgaaaaaatagctgtctattcaaattctgctatgctgccatactatagt 13609  T
Q  115 -atgccgctatagctactatttaac 138  Q
      |||||||||||| ||||||||||    
T  13610 gctgccgctatagcaactatttaac 13634  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 27456355 - 27456321
Alignment:
Q  69 cggaaaatagcagtttgttcaaattctgctatact 103  Q
    ||||||||||||||||||||||||||| |||||||    
T  27456355 cggaaaatagcagtttgttcaaattcttctatact 27456321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 99
Target Start/End: Complemental strand, 34222394 - 34222366
Alignment:
Q  71 gaaaatagcagtttgttcaaattctgcta 99  Q
    |||||||||||||||||||||||||||||    
T  34222394 gaaaatagcagtttgttcaaattctgcta 34222366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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