View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6359_high_5 (Length: 308)
Name: NF6359_high_5
Description: NF6359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6359_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 3594042 - 3594342
Alignment:
| Q |
1 |
tacggataaagacatttcatgaagaaataaatagaataccttgatttcacattcaaaagagttcttattttattcaaaagttttaatcttttattttcta |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3594042 |
tacggataaagatatttcatgaagaaataaatagaataccttgatttcacattcaaaagagttcttattttattcaaaagttttaatcttttattttcta |
3594141 |
T |
|
| Q |
101 |
tatctaaataaaatattatgtctaacaaattgtgattaacaaaaggtccaaaaaataaataatatattctttaaattaagaagatgatgaagaaacatag |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3594142 |
tatctaaataaaatattatgtctaacaaactgtgattaacaaaaggtccaaaaaaaaaata--ttattctttaaattaagaagatgatgaagaaacatag |
3594239 |
T |
|
| Q |
201 |
atccaaaaacattttcaacaagaaaaccttacccttcttatatcaagagttttagttcactttttcctcttgtatgattttaccaagctagatctctgct |
300 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
3594240 |
atccaaaaacattttcaacaagaaaac----cccttcttacatcaagagttttagttcactttttcctcttgtatgattttaccaagctagatttctgtt |
3594335 |
T |
|
| Q |
301 |
cctccac |
307 |
Q |
| |
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| ||||| |
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|
| T |
3594336 |
cttccac |
3594342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 56 - 307
Target Start/End: Original strand, 21452267 - 21452524
Alignment:
| Q |
56 |
aaagagttcttattttattcaaaagttttaatcttttattttctatatctaaataaaatattatgtctaacaaattgtgattaacaaaaggtccaaaaaa |
155 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
21452267 |
aaagagttcttattttattcaaaagtttgaatcttttattttttatatataaataaaatattatgtctaacaaactgtgtttaacaaaaggtccaaaaaa |
21452366 |
T |
|
| Q |
156 |
taaa-----taatat-attctttaaattaagaagatgatgaagaaacatagatccaaaaacattttcaacaagaaaaccttacccttcttatatcaagag |
249 |
Q |
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||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
21452367 |
aaaaaaacataatattattctttaaattaagaagatgatgaagaaacatagatccaaaaacattttcaacaagaaaaccttacccttctcacatcaagag |
21452466 |
T |
|
| Q |
250 |
ttttagttcactttttcctcttgtatgattttaccaagctagatctctgctcctccac |
307 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| |||| || ||||| |
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| T |
21452467 |
ttttagttcactttttcctcttgtatgattttaccaaactagatttctgttcttccac |
21452524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21446063 - 21446109
Alignment:
| Q |
1 |
tacggataaagacatttcatgaagaaataaatagaataccttgattt |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21446063 |
tacggataaagacatttcatgaagaaataaactgaataccttgattt |
21446109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 106 - 298
Target Start/End: Original strand, 22518630 - 22518829
Alignment:
| Q |
106 |
aaataaaatattatgtctaacaaattgtgattaacaaaaggtccaaaaaataaataata--------tattctttaaattaagaagatgatgaagaaaca |
197 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||| |||||| ||| || | ||||||||||||||||||||||||||||||||| |
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| T |
22518630 |
aaataaaatattatgtctaacaaactgtgtttaacaaaaggtaaaaaaaaaaaaaaaaaaaaaatattattctttaaattaagaagatgatgaagaaaca |
22518729 |
T |
|
| Q |
198 |
tagatccaaaaacattttcaacaagaaaaccttacccttcttatatcaagagttttagttcactttttcctcttgtatgattttaccaagctagatctct |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| | || |||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
22518730 |
tagatccaaaaacattttcaacaagaaaacctaacccttctcacat-aagagttttagttcactttttcctcttgtatgattttaccgagctagatttct |
22518828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 271
Target Start/End: Complemental strand, 32617666 - 32617562
Alignment:
| Q |
167 |
ttctttaaattaagaagatgatgaagaaacatagatccaaaaacattttcaacaagaaaaccttacccttcttatatcaagagttttagttcactttttc |
266 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||| ||||| ||||| | ||||| ||| ||||||||| || |
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| T |
32617666 |
ttctttaaattaagaatatgatgaagaaacatagatccaaaaacattttcaagaataaaatcttacacttctctcaataagagcttttgttcactttatc |
32617567 |
T |
|
| Q |
267 |
ctctt |
271 |
Q |
| |
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||||| |
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| T |
32617566 |
ctctt |
32617562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 271
Target Start/End: Original strand, 27431232 - 27431333
Alignment:
| Q |
171 |
ttaaattaagaagatgatgaagaaacatagatcc-aaaaacattttcaacaagaaaaccttacccttcttatatcaagagttttagttcactttttcctc |
269 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| |||||||||||||||||||| | |||| |||| |||||||||| || ||||||||||| ||| |
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| T |
27431232 |
ttaaaataagaaaatgatgaagaaacatagatccaaaaaacattttcaacaagaacatcttagaattctcttatcaagagtctttgttcacttttttctc |
27431331 |
T |
|
| Q |
270 |
tt |
271 |
Q |
| |
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|| |
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|
| T |
27431332 |
tt |
27431333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 27431063 - 27431114
Alignment:
| Q |
62 |
ttcttattttattcaaaagttttaatcttttatt-ttctatatctaaataaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| || ||| |||||||||| |
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|
| T |
27431063 |
ttcttattttattcaaaagttttaattttttattcttttatgtctaaataaa |
27431114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 95
Target Start/End: Complemental strand, 24130833 - 24130794
Alignment:
| Q |
56 |
aaagagttcttattttattcaaaagttttaatcttttatt |
95 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||| |
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| T |
24130833 |
aaagagttcttattttattcaaaagttgtaatcttttatt |
24130794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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