View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6359_low_1 (Length: 653)
Name: NF6359_low_1
Description: NF6359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6359_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 1 - 644
Target Start/End: Original strand, 50228793 - 50229435
Alignment:
| Q |
1 |
caatctatgattgttcaaacactaccatgattggagtttgatacgatccaatagctgcttgaaagattcttatttcctacaaaaaattcttgaattatgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50228793 |
caatctatgattgttcaaacactaccatgattggagtttgatacgatccaatagctgcttgaaagattcttatttcctacaaaaaattcttgaattatgt |
50228892 |
T |
|
| Q |
101 |
tctttccaaataattcaaatacatgtcatccaaattgcctgaaaacacatacaaaattcctttctaaacaagtaagcaccacaaaattgtaaagcatgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
50228893 |
tctttccaaataattcaaatacatgtcatccaaattgcctgaaaacacatacaaaattcctttctaaacaagtaagcaccacaaaatt-taaagcatgct |
50228991 |
T |
|
| Q |
201 |
ctccaatgtcaactgggttcacaaaacaatacccaaccaccgacaaacgccattccaaacattactaaaaacttcacaacctnnnnnnntatccttaatt |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
50228992 |
ctccaatgtcaactgggttcacaaaacaatacccaaccaccgacaaacgccattccaaacattactaaaaacttcacaacctaaaaaaatatccttaatt |
50229091 |
T |
|
| Q |
301 |
gtttcctccttcccaccccctcccgggcaaagcaaagaagtagcaggcaccactccacgttgaaaaaagaagatccttagtaggaatccttttgttcaag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50229092 |
gtttcctccttcccaccccctcccgggcaaagcaaagaagtagcaagcaccactccatgttgaaaaaagaagatccttagtaggaatccttttgttcaag |
50229191 |
T |
|
| Q |
401 |
agcctccatatataatgatatcttcatagtttagttttgttccaaaccaaatgagnnnnnnntatctaagttgggttgatcacatgcttatgagtttgat |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
50229192 |
agcctccatatataatgatatcttcatagtttagttttgttccaaaccaaatgagaaaaaaatatctaagttgggttgatcacatgcttatgagtttgat |
50229291 |
T |
|
| Q |
501 |
aagcatctttgactgaatatccgttagacagattaagtaaccaaagtcatcaatcaaccatgttaacctgtnnnnnnngccgcctcctaagtaaaaagac |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50229292 |
aagcatctttgactgaatatccgttagacagactaagtaaccaaagtcatcaatcaaccatgttaacctgtaaaaaaagccgcctcctaagtaaaaagac |
50229391 |
T |
|
| Q |
601 |
gccttctccacctctgcacatccactccccaccctcacctatgc |
644 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50229392 |
gccttctccacctctgcacatccactccccaccctcacctatgc |
50229435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 143 - 365
Target Start/End: Original strand, 39380661 - 39380885
Alignment:
| Q |
143 |
aaacacatacaaaattcctttctaaacaagtaagcaccacaaaa-ttgtaaagcatgctctccaatgtcaactgggttcacaaaacaa-tacccaaccac |
240 |
Q |
| |
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||||||||||||| | ||||||| |||| |||||||||||||| ||||| |||| |||||||| |||||| ||| ||| |||||||| |||||||||| |
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| T |
39380661 |
aaacacatacaaattccctttctgaacatataagcaccacaaaaattgtagagcaagctctccattgtcaattggattctcaaaacaaatacccaaccat |
39380760 |
T |
|
| Q |
241 |
cgacaaacgccattccaaacattactaaaaacttcacaacctnnnnnnntatccttaattgtttcctccttcccaccccctcccgggcaaagcaaagaag |
340 |
Q |
| |
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||| |||| ||||||||||||||||||||||| ||||| | | | ||| |||||||||||||||||| |||||| | |||| |||||||| |
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| T |
39380761 |
cgaaaaacaccattccaaacattactaaaaacatcacatcttaattaaagacaattagttgtttcctccttcccacaccctcctgaacaaaacaaagaag |
39380860 |
T |
|
| Q |
341 |
tagcaggcaccactccacgttgaaa |
365 |
Q |
| |
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|| |||||| ||||||||| ||||| |
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|
| T |
39380861 |
tatcaggcaacactccacggtgaaa |
39380885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 39380590 - 39380630
Alignment:
| Q |
29 |
gattggagtttgatacgatccaatagctgc-ttgaaagatt |
68 |
Q |
| |
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||||| |||||||||||||||||||||||| |||||||||| |
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|
| T |
39380590 |
gattgaagtttgatacgatccaatagctgctttgaaagatt |
39380630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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