View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6359_low_10 (Length: 240)
Name: NF6359_low_10
Description: NF6359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6359_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 140 - 225
Target Start/End: Original strand, 35577890 - 35577975
Alignment:
| Q |
140 |
gactacgatttccgagacaccaatttcatgaaaaccttaaacagatcatgcaaatcagctaagtacgatgaatctttatactttct |
225 |
Q |
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| T |
35577890 |
gactacgatttccgagacaccaatttcatgaaaaccttaaacagatcatgcaaatcagctaagtacgatgaatctttatactttct |
35577975 |
T |
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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35577754 - 35577795
Alignment:
| Q |
1 |
cacaatcatcatcacttcctcaattccattcctaaacgaagc |
42 |
Q |
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| T |
35577754 |
cacaatcatcatcacttcctcaattctattcctaaacgaagc |
35577795 |
T |
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