View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6359_low_3 (Length: 401)
Name: NF6359_low_3
Description: NF6359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6359_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 49538832 - 49538455
Alignment:
| Q |
19 |
tggttggaggcagcggcttggatcttttagaatttgttgtctcatatcgttaacaaatagagttgcaattcgtaatggctctattagtgtgctctagtca |
118 |
Q |
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| T |
49538832 |
tggttggaggcagcggcttggatcttttagaatttgttgtctcatatcgttaacaaatagagttgcaattcgtaatggctctattagtgtgctctagtca |
49538733 |
T |
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| Q |
119 |
attaactaagcataatcaaatcctccactagtaacctagtaaagtcacaatgtaagtcatatacatttttaatctagaccactacaaggaaaaagggtag |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49538732 |
attaactaagcataatcaaatcctccactagtaacctagtatattcacaatgtaagtcatatacatttttaatctagaccactacaaggaaaaagggtag |
49538633 |
T |
|
| Q |
219 |
taaagtaacataactttgcatgcatgtaatgaagcttcacattcaaaataacaagattaatagaaaacttatcttcattgacattttcaagcatatcaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49538632 |
taaagtaacataactttgcatgcatgtaatgaagcttcacattcaaaataacaagattaatagaaaacttatcttcattgacattttcaagcatatcaca |
49538533 |
T |
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| Q |
319 |
atactttacattttcccttttgccacccgtctttcttattcacactcattctcatctactccatcctttcttctcactc |
397 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49538532 |
atactttacatttt-ccttttgccactcgtctttcttattcacactcattctcatctactccatcctttcttttcactc |
49538455 |
T |
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