View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6359_low_6 (Length: 265)
Name: NF6359_low_6
Description: NF6359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6359_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 3594025 - 3593789
Alignment:
| Q |
16 |
atgaacatcatatgattttactgcaaactatcatatttttcaaaaaatattaggcaacatacaagcccactcaatcaacattttctgcaagaaattaata |
115 |
Q |
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| T |
3594025 |
atgaacatcatatgattttgctgcaaactatcatatttttcaaaaaatattaggcaacatacaagcctactcaatcaacattttctgcaagaaattaata |
3593926 |
T |
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| Q |
116 |
tcgaaatgagttatttattttgttgaggatttatgtcttaaaccaattagtaatttagtaattctcatagtttacttacttgtgtctcttttc-tttgat |
214 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3593925 |
tcgaaatgagttatttattttgttgatgatttatgtcttaaaccaattagtaatttagtaattctcatagtttacttacttgtgtctcttttcttttgat |
3593826 |
T |
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| Q |
215 |
tgtagttcaatgaagacaagaactccaatcaactatc |
251 |
Q |
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| T |
3593825 |
tgtagttcaatgaagacaagaactccaatcaactatc |
3593789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 18344548 - 18344613
Alignment:
| Q |
102 |
gcaagaaattaatatcgaaatgagttatttattttgttgaggatttatgtcttaaaccaattagta |
167 |
Q |
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| T |
18344548 |
gcaagaaattaacacttaaatgggtcatttattttgttgaggatttatgtactaaactaattagta |
18344613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 21446046 - 21445871
Alignment:
| Q |
16 |
atgaacatcatatgattttactgcaaactatcatatttttcaaaaaata-ttaggcaacatacaagcccactcaatcaacattttctgcaagaaattaat |
114 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21446046 |
atgaacgtcatatgattttgctgcaaactatcatatttttcaaaaaaaaattaggcaacatacaagcccactcaatcaacatttcctgcaagaaattaat |
21445947 |
T |
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| Q |
115 |
atcgaaatgagttatttattttgttgaggatttatgtcttaaaccaattagtaatttagtaattctcatagtttac |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21445946 |
atcgaaatgagttatttattttgttgaggatttatgtcttaaacgaattagtaatttagtaattctcatagtttac |
21445871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 100 - 212
Target Start/End: Original strand, 32617889 - 32618001
Alignment:
| Q |
100 |
ctgcaagaaattaatatcgaaatgagttatttattttgttgaggatttatgtcttaaaccaattagtaatttagtaattctcatagtttacttacttgtg |
199 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||| |||||||||| ||| |||| |
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| T |
32617889 |
ctgcaagaaattaatactgaaatgagtcatttattttgttgaggattgatgtattaaaccaattagagatttagtaattcccatagtttacatacctgtg |
32617988 |
T |
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| Q |
200 |
tctcttttctttg |
212 |
Q |
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| T |
32617989 |
tctcttttctttg |
32618001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 41772021 - 41771987
Alignment:
| Q |
187 |
ttacttacttgtgtctcttttctttgattgtagtt |
221 |
Q |
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| T |
41772021 |
ttacttacttgtgtctcttttctttgtttgtagtt |
41771987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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