View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6359_low_9 (Length: 244)
Name: NF6359_low_9
Description: NF6359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6359_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 14653385 - 14653171
Alignment:
| Q |
13 |
atgaaggccaagttttgagactaagaaaatctttatatggattgaagtaagcctcccgagcatggtgagatcatccaagagcctgcacaaaaattgaaca |
112 |
Q |
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| T |
14653385 |
atgaaggccaagttttgaaactaagaaaatctttatatgggttgaagcaagcctcccgatcatgttgagatcatccaagagcctccacaaaaattgaaca |
14653286 |
T |
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| Q |
113 |
ggatccttagacctttttggatcagtaacaagcttgttaacggacactcgaatgtgtgagatcatcacttcttttatttttgagagaccattaggaacac |
212 |
Q |
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| T |
14653285 |
ggatccttaaccctttttggatcagtaacaagcttgttaacagacactcgaatgtgtgagatcatcacttcttttatttttgagagaccattaggaacac |
14653186 |
T |
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| Q |
213 |
gtcggaacaagttat |
227 |
Q |
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||||||||||||||| |
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| T |
14653185 |
gtcggaacaagttat |
14653171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 83 - 227
Target Start/End: Complemental strand, 14661750 - 14661606
Alignment:
| Q |
83 |
tcatccaagagcctgcacaaaaattgaacaggatccttagacctttttggatcagtaacaagcttgttaacggacactcgaatgtgtgagatcatcactt |
182 |
Q |
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|||||||||||||| |||||||| ||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
14661750 |
tcatccaagagcctctgcaaaaattcaacaggatcctccaacctctttggatcagtaacaagcttgtcaacggacactcgaatgtgtgagatcatcgctt |
14661651 |
T |
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| Q |
183 |
cttttatttttgagagaccattaggaacacgtcggaacaagttat |
227 |
Q |
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| T |
14661650 |
cttgtatttttaagagaccatcaggaacacgacggaacaagttat |
14661606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 17690367 - 17690581
Alignment:
| Q |
13 |
atgaaggccaagttttgagactaagaaaatctttatatggattgaagtaagcctcccgagcatggtgagatcatccaagagcctgcacaaaaattgaaca |
112 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17690367 |
atgaaggccaagttttaagactaagaaaatctttatatgggttgaagcaagcctcctgagcatggtgagatcatccaagagcctccacaaaaattgaaca |
17690466 |
T |
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| Q |
113 |
ggatccttagacctttttggatcagtaacaagcttgttaacggacactcgaatgtgtgagatcatcacttcttttatttttgagagaccattaggaacac |
212 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
17690467 |
ggatccttcaacctttttggatcaataacaagcttgttaacggacactcgaatgtgtgagatcatcacgtcttttatttttgagagaccattaggaacac |
17690566 |
T |
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| Q |
213 |
gtcggaacaagttat |
227 |
Q |
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||||||||||||||| |
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| T |
17690567 |
gtcggaacaagttat |
17690581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 227
Target Start/End: Original strand, 17683511 - 17683655
Alignment:
| Q |
83 |
tcatccaagagcctgcacaaaaattgaacaggatccttagacctttttggatcagtaacaagcttgttaacggacactcgaatgtgtgagatcatcactt |
182 |
Q |
| |
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|||||||| ||||| |||||||| ||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
17683511 |
tcatccaatagcctctgcaaaaattcaacaggatcctccaacctctttggatcagtaacaagcttgtcaacggacactcgaatgtgtgagatcatcgctt |
17683610 |
T |
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| Q |
183 |
cttttatttttgagagaccattaggaacacgtcggaacaagttat |
227 |
Q |
| |
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||| ||||||||||||||||| |||||| || ||||||||||||| |
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| T |
17683611 |
cttgtatttttgagagaccatcaggaacccgacggaacaagttat |
17683655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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