View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6360_high_11 (Length: 434)
Name: NF6360_high_11
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 47494324 - 47494011
Alignment:
| Q |
19 |
caattgcatgtctttctctggctgcaaagatggaggagtgtaatgtgccagggctatcacagtttcaattggaagatgattattatgtctttgaaggaaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47494324 |
caattgcatgtctttctctggctgcaaagatggaggagtgtaatgtgccagagctatcacagtttcaattggaagatgattat---gtctttgaaggaaa |
47494228 |
T |
|
| Q |
119 |
agtgattcaaaaaatggagctttttgtacttagctcattggattggaacatgggtatcatcactcccttttcattcctttcttacttcatcaaaaagttc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47494227 |
agtgattcaaaaaatggagctttttgtacttagctcattggattggaacatgggtatcatcactcccttttcattcctttcttacttcatcaaaaagttc |
47494128 |
T |
|
| Q |
219 |
agcaatgaatcaccaagtcctattgtttccaacacaatgcatcctattttcactgtagtaatggaaggtgaatcaatcatgaactctctttttgagttta |
318 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47494127 |
agcaatgaatcaccaagtcctattatttccaacacaatgcatcctattttcactgtagtaatggaaggtgaatcaatcatgaactctctttttgagttta |
47494028 |
T |
|
| Q |
319 |
aaagattatttacacta |
335 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
47494027 |
aaagattatttacacta |
47494011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 334 - 427
Target Start/End: Complemental strand, 47493989 - 47493896
Alignment:
| Q |
334 |
taatgattaaactctaatattttttaataatcaaatgattatgttatattgatactagtagcatctaaatcttttgcattgatgatgatgatgt |
427 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47493989 |
taatgattaaactcaaatattttttaataatcaaatgattatgttatattgatactagtagcatctaaatcttttgcattgatgatgacgatgt |
47493896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 24221431 - 24221335
Alignment:
| Q |
115 |
gaaaagtgattcaaaaaatggagctttttgtacttagctcattggattggaacatgggtatcatcactcccttttcattcctttcttacttcatcaa |
211 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| ||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24221431 |
gaaaagtagttcaaaaaatggagctttttgttcttagcagattagattggaacatgagtattatcactcccttttcattcctttcttacttcatcaa |
24221335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University