View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6360_high_14 (Length: 390)

Name: NF6360_high_14
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6360_high_14
NF6360_high_14
[»] chr4 (1 HSPs)
chr4 (1-341)||(44523856-44524199)
[»] chr2 (4 HSPs)
chr2 (157-341)||(41318931-41319115)
chr2 (1-160)||(41322105-41322264)
chr2 (1-89)||(37726150-37726238)
chr2 (274-341)||(6128526-6128593)
[»] chr5 (1 HSPs)
chr5 (1-341)||(12503203-12503537)
[»] chr7 (3 HSPs)
chr7 (273-342)||(11831185-11831254)
chr7 (279-343)||(37130520-37130584)
chr7 (292-342)||(11831132-11831182)
[»] chr8 (1 HSPs)
chr8 (256-342)||(7495621-7495707)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 44523856 - 44524199
Alignment:
Q  1 taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactaatttcactaaagtacatgttacact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||    
T  44523856 taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactgatgtctctaaagtacatgttacact 44523955  T
Q  101 tacatatatatgttgaataaccaacggtaataaacatggtataaagagatatacattaagtgtcttcatagctattatttgcttttgataagccaacggt 200  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  44523956 tacatatatatgtcgaataaccaacggtaataaacatgatataaagagatatacattaagtgtcttcatggctattatttgcttttgataagccaacagt 44524055  T
Q  201 aataaacatcatataaggaaatatacttatggtttgactccatgtattaatgcattgcattcacacatattcctttccaatggtttgtttgatttctctt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44524056 aataaacatcatataaggaaatatacttatggtttgactccatgtattaaggcattacattcacacatattcctttccaatggtttgtttgatttctctt 44524155  T
Q  301 gatttgat---tcattaagagaggaatcttcattattctttaca 341  Q
    ||||||||   |||||||||||||||||||||||||||||||||    
T  44524156 gatttgattcatcattaagagaggaatcttcattattctttaca 44524199  T

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Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 157 - 341
Target Start/End: Complemental strand, 41319115 - 41318931
Alignment:
Q  157 taagtgtcttcatagctattatttgcttttgataagccaacggtaataaacatcatataaggaaatatacttatggtttgactccatgtattaatgcatt 256  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  41319115 taagtgtcttcatggctattatttgcttttgataagtcaacggtaataaacatcatataagtaaatatacttatggtttgactccatgtattaaggcatt 41319016  T
Q  257 gcattcacacatattcctttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41319015 gcattcacacatattcctttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca 41318931  T

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Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 41322264 - 41322105
Alignment:
Q  1 taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactaatttcactaaagtacatgttacact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || || |||||||||||||||||||    
T  41322264 taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgttcactgatatctctaaagtacatgttacact 41322165  T
Q  101 tacatatatatgttgaataaccaacggtaataaacatggtataaagagatatacattaag 160  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41322164 tacatatatatgttgaataaccaacggtaataaacatgatataaagagatatacattaag 41322105  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 37726238 - 37726150
Alignment:
Q  1 taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactaatttcactaaagta 89  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| || || ||||||||    
T  37726238 taatgaaaataaaaatatgatatgaacaatggacagtggctagaatgtaatctggtttgtatattatgtccactgatatctctaaagta 37726150  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 6128526 - 6128593
Alignment:
Q  274 tttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca 341  Q
    ||||||||||||||||||| || |||||||||||| |||||   || |||||||| | ||||||||||    
T  6128526 tttccaatggtttgtttgacttgtcttgatttgatccattacttgatgaatcttcttgattctttaca 6128593  T

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Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 12503203 - 12503537
Alignment:
Q  1 taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactaatttcactaaagtacatgttacact 100  Q
    |||||||| |||||||| |||||| ||||||||| || ||| |||||||||| |||||||||||||||||||||||| || ||| ||||||||||||       
T  12503203 taatgaaagtaaaaatatgatatggacaatggactgtagctagaatgtaatctggtttgtatattatgtccactaatctctctacagtacatgttac--- 12503299  T
Q  101 tacatatatatgttgaataaccaacggtaataaacatggtataaagagatatacattaagtgtcttcatagctattatttgcttttgataagccaacggt 200  Q
       |||||||||   |||| |||||||||||  ||||| ||||| || |||||||||||||| ||| || |||||||||| |||||||||||||||||||    
T  12503300 ---atatatatgactaatagccaacggtaatgcacatgatataaggaaatatacattaagtggctttatggctattatttccttttgataagccaacggt 12503396  T
Q  201 aataaacatcatataaggaaatatactta------------tggtttgactccatgtattaatgcattgcattcacacatattcctttccaatggtttgt 288  Q
    |||||||   |||||||||||||||||||            |||||||||||||||||| || |||||||||||||||  |||  ||||||||||         
T  12503397 aataaaccatatataaggaaatatacttaagtgcctctatttggtttgactccatgtatcaaggcattgcattcacac--attgatttccaatgg----- 12503489  T
Q  289 ttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca 341  Q
        ||| ||||||||||||||||||| |||||||||||| ||||||||||||    
T  12503490 ----tttatcttgatttgattcattaa-agaggaatcttcgttattctttaca 12503537  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 342
Target Start/End: Original strand, 11831185 - 11831254
Alignment:
Q  273 ctttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttacaa 342  Q
    ||||||||| ||||||||||||| ||||||||||||||||||| ||  || |||||||||||||||||||    
T  11831185 ctttccaatagtttgtttgatttgtcttgatttgattcattaatagttgagtcttcattattctttacaa 11831254  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 37130584 - 37130520
Alignment:
Q  279 aatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttacaat 343  Q
    |||||||| |||||||| ||||||||||||||||||| ||  || | ||||||||||||||||||    
T  37130584 aatggtttttttgatttgtcttgatttgattcattaatagttgagttttcattattctttacaat 37130520  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 342
Target Start/End: Complemental strand, 11831182 - 11831132
Alignment:
Q  292 atttctcttgatttgattcattaagagaggaatcttcattattctttacaa 342  Q
    |||| ||||||||||||||||||| ||  || |||||||||||||||||||    
T  11831182 atttgtcttgatttgattcattaatagttgagtcttcattattctttacaa 11831132  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 7495621 - 7495707
Alignment:
Q  256 tgcattcacacatattcctttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttacaa 342  Q
    |||||||| ||| |||  |||| ||||||||||||||||| | || |||||||  ||| |  ||||||||||||| |||||||||||    
T  7495621 tgcattcagacaaattattttctaatggtttgtttgatttgttttcatttgatctattgattgaggaatcttcatgattctttacaa 7495707  T

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