View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6360_high_21 (Length: 324)

Name: NF6360_high_21
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6360_high_21
NF6360_high_21
[»] chr5 (5 HSPs)
chr5 (170-317)||(13457801-13457948)
chr5 (1-107)||(13457632-13457738)
chr5 (173-303)||(31233475-31233604)
chr5 (34-93)||(31233686-31233745)
chr5 (49-107)||(17532542-17532601)
[»] chr2 (1 HSPs)
chr2 (173-302)||(24453898-24454026)
[»] chr3 (3 HSPs)
chr3 (173-291)||(23233750-23233869)
chr3 (188-303)||(33330644-33330756)
chr3 (57-91)||(33330555-33330589)
[»] chr6 (2 HSPs)
chr6 (173-303)||(27174346-27174475)
chr6 (173-303)||(27231151-27231280)
[»] chr8 (1 HSPs)
chr8 (9-56)||(32149771-32149818)
[»] chr7 (3 HSPs)
chr7 (49-107)||(14806112-14806171)
chr7 (49-107)||(15253106-15253165)
chr7 (60-106)||(2599569-2599615)


Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 170 - 317
Target Start/End: Original strand, 13457801 - 13457948
Alignment:
Q  170 cgatatgtttcagctctatttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtctttcaatatatcatttccataat 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13457801 cgatatgtttcagctctatttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtcttccaatatatcatttccataat 13457900  T
Q  270 actttttctctcgtatcccttttaaaaccaacaattctacctatgcta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13457901 actttttctctcgtatcccttttaaaaccaacaattctacctatgcta 13457948  T

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Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 13457632 - 13457738
Alignment:
Q  1 tgggactttgcagcaactaaggcacggaggagatttgtagaaattgacttagtattccttagtattttcagttatgatattattaagttttttatagaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13457632 tgggactttgcagcaactaaggcacggaggagatttgtagaaattgacttagtattccttagtattttcagttatgatattattaagttttttatagaca 13457731  T
Q  101 ttagtga 107  Q
    |||||||    
T  13457732 ttagtga 13457738  T

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Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 173 - 303
Target Start/End: Complemental strand, 31233604 - 31233475
Alignment:
Q  173 tatgtttcagctctatttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtctttcaatatatcatttccataatact 272  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||   |||||||||||| |||||   |    
T  31233604 tatgtttcagctctatttataaagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttttgtctacaaatatatcattttcataaattt 31233505  T
Q  273 ttttctctcgtatcccttttaaaaccaacaa 303  Q
    ||||||||| |||||| ||||||||||||||    
T  31233504 ttttctctcatatccc-tttaaaaccaacaa 31233475  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 31233745 - 31233686
Alignment:
Q  34 tttgtagaaattgacttagtattccttagtattttcagttatgatattattaagtttttt 93  Q
    ||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||    
T  31233745 tttgtagaaattgccttagtattctttagtatttgcagttatgatattattaagtttttt 31233686  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 17532542 - 17532601
Alignment:
Q  49 ttagtattccttagtattttcagttatgatattattaagttttttat-agacattagtga 107  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  17532542 ttagtatgccttagtattttcagttatgatattaataagttttttatgagacattagtga 17532601  T

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Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 173 - 302
Target Start/End: Original strand, 24453898 - 24454026
Alignment:
Q  173 tatgtttcagctctatttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtctttcaatatatcatttccataatact 272  Q
    ||||||| |||||||||||||||| |||||| | ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24453898 tatgttttagctctatttatagagtactgaactatttgtaatggtatgtttgatgttataaacatatttctgtctttcaatataacatttccataatact 24453997  T
Q  273 ttttctctcgtatcccttttaaaaccaaca 302  Q
    ||||||||| |||||| | |||||||||||    
T  24453998 ttttctctcctatccc-tataaaaccaaca 24454026  T

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Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 23233869 - 23233750
Alignment:
Q  173 tatgtttcagctctatttatagagcactgaagtgtt-tgtaatggtgtgcttgatgttataaacatatttctgtctttcaatatatcatttccataatac 271  Q
    |||||||||||||||||||||| ||||| |||| || |||||||||||| |||||||||||||| ||||||||||||  |||||||||||||||||||||    
T  23233869 tatgtttcagctctatttatagggcactaaagtattgtgtaatggtgtgtttgatgttataaacttatttctgtcttctaatatatcatttccataatac 23233770  T
Q  272 tttttctctcgtatcccttt 291  Q
    |||||||||| |||||||||    
T  23233769 tttttctctcatatcccttt 23233750  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 303
Target Start/End: Original strand, 33330644 - 33330756
Alignment:
Q  188 tttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtctttcaatatatcatttccataatactttttctctcgtatcc 287  Q
    |||| |||||| |||||||||||||| | || | ||||||||||||||||||||||||||| | |||| ||||||||||| ||| ||||||||| |||||    
T  33330644 tttacagagcagtgaagtgtttgtaaggatgagtttgatgttataaacatatttctgtcttccgatatgtcatttccatattac-ttttctctcatatcc 33330742  T
Q  288 cttttaaaaccaacaa 303  Q
      ||||||||||||||    
T  33330743 --tttaaaaccaacaa 33330756  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 33330555 - 33330589
Alignment:
Q  57 ccttagtattttcagttatgatattattaagtttt 91  Q
    |||||||||||||||||||||||||| ||||||||    
T  33330555 ccttagtattttcagttatgatattaataagtttt 33330589  T

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Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 303
Target Start/End: Original strand, 27174346 - 27174475
Alignment:
Q  173 tatgtttcagctctatttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtctttcaatatatcatttccataatact 272  Q
    ||||||| ||||||||||||| |||| ||||||||||||||  ||| |||||||||||| || |||||| ||| ||  ||||  ||||||||||| ||||    
T  27174346 tatgtttgagctctatttatatagcagtgaagtgtttgtaagagtgagcttgatgttatcaaaatatttttgttttctaatacgtcatttccatattact 27174445  T
Q  273 ttttctctcgtatcccttttaaaaccaacaa 303  Q
     |||||||| |||| | || |||||||||||    
T  27174446 atttctctcatatctc-ttcaaaaccaacaa 27174475  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 303
Target Start/End: Original strand, 27231151 - 27231280
Alignment:
Q  173 tatgtttcagctctatttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtctttcaatatatcatttccataatact 272  Q
    ||||||| ||||||||||||| |||| ||||||||||||||  ||| |||||||||||| || |||||| ||| ||  ||||  ||||||||||| ||||    
T  27231151 tatgtttgagctctatttatatagcagtgaagtgtttgtaagagtgagcttgatgttatcaaaatatttttgttttctaatacgtcatttccatattact 27231250  T
Q  273 ttttctctcgtatcccttttaaaaccaacaa 303  Q
     |||||||| |||| | || |||||||||||    
T  27231251 atttctctcatatctc-ttcaaaaccaacaa 27231280  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 32149771 - 32149818
Alignment:
Q  9 tgcagcaactaaggcacggaggagatttgtagaaattgacttagtatt 56  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||    
T  32149771 tgcagcaactaaggcaaggaggagatttgtagaaattgccttagtatt 32149818  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 14806171 - 14806112
Alignment:
Q  49 ttagtattccttagtattttcagttatgatattattaagttttttat-agacattagtga 107  Q
    ||||||| ||||||||||||||||||||||| || |||||||||||| ||||||||||||    
T  14806171 ttagtatgccttagtattttcagttatgatactaataagttttttatgagacattagtga 14806112  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 15253165 - 15253106
Alignment:
Q  49 ttagtattccttagtattttcagttatgatattattaagttttttat-agacattagtga 107  Q
    ||||||| ||||||||||||||||||||||| || |||||||||||| ||||||||||||    
T  15253165 ttagtatgccttagtattttcagttatgatactaataagttttttatgagacattagtga 15253106  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 2599569 - 2599615
Alignment:
Q  60 tagtattttcagttatgatattattaagttttttatagacattagtg 106  Q
    |||||||||||||||||||||||||| |||||| | |||||||||||    
T  2599569 tagtattttcagttatgatattattatgtttttaagagacattagtg 2599615  T

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