View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6360_high_25 (Length: 290)
Name: NF6360_high_25
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 114 - 280
Target Start/End: Complemental strand, 7117850 - 7117684
Alignment:
| Q |
114 |
cagatcaatttaaatcagtttacaagttcatctctatttacaaaagcacaaaccatgatctcacttcctgctacgacaacgctggcaacaaatattcaga |
213 |
Q |
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| T |
7117850 |
cagatcaattgaaatcagtttacaagttcatctctatttacaaaaacacaaaccacaatctcacttcctgcaacgaaaacgctggcaacaaatattcaga |
7117751 |
T |
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| Q |
214 |
ggaaaattttgcggtatttttatggcctaaagccttaaatttcttctctcaaggcttggattctctg |
280 |
Q |
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| T |
7117750 |
ggaaaattttgcggtatttttatggcctaaagccttaaatttcttctctcaaggcttggattctctg |
7117684 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7117963 - 7117915
Alignment:
| Q |
1 |
acctcgtgcataaatttagaaccattataacataatgctttagaaccgg |
49 |
Q |
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| T |
7117963 |
acctcgtgcataaatttagaaccattataacataatggtttagaaccgg |
7117915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 27896694 - 27896626
Alignment:
| Q |
114 |
cagatcaatttaaatcagtttacaagttcatctctatttacaaaagcacaaaccatgatctcacttcct |
182 |
Q |
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| T |
27896694 |
cagataaatttaaatcagtttgcaagttcatctctatttaccaaaacacaaaccacaacctcacttcct |
27896626 |
T |
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