View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6360_high_30 (Length: 277)
Name: NF6360_high_30
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_high_30 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 79 - 259
Target Start/End: Complemental strand, 41323457 - 41323277
Alignment:
| Q |
79 |
gtattaattgttctaaatgaatttggcaaaaataccctgcagttttccttctaaagatatttcgtatatttcttttataggaatgcacattcagttctcc |
178 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41323457 |
gtattaattgttctaaatgaattcggcaaaaataccctgcagttttccttctaaagatatttcgtatatttcttttataggaatgcacattcagttctcc |
41323358 |
T |
|
| Q |
179 |
aggtgaaggtccaattcgcgaagatgctccaagttggtgtcgtgctccatttgaaccagagggcttgttgaggtttgcctt |
259 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41323357 |
aggcgaaggtccaattcgcgaagatgctccaagttggtgtcgtgctccatttgaaccagagggcttgttgaggtttgcctt |
41323277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 252
Target Start/End: Complemental strand, 41308826 - 41308730
Alignment:
| Q |
156 |
taggaatgcacattcagttctccaggtgaaggtccaattcgcgaagatgctccaagttggtgtcgtgctccatttgaaccagagggcttgttgaggt |
252 |
Q |
| |
|
|||| ||||||||| ||||| ||| |||| |||||| |||| || ||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
41308826 |
taggcatgcacatttagttccccaagtgagggtccatttcgtgatgatgctccaagctggtgtcttgctccatttgaaccagagggcttattgaggt |
41308730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 27658321 - 27658411
Alignment:
| Q |
162 |
tgcacattcagttctccaggtgaaggtccaattcgcgaagatgctccaagttggtgtcgtgctccatttgaaccagagggcttgttgaggt |
252 |
Q |
| |
|
||||||||||||||||||| ||| ||||| |||| | ||||| |||| |||||||||||||| |||||||| ||||| || ||||||| |
|
|
| T |
27658321 |
tgcacattcagttctccagctgatggtcctcttcgtaaggatgcaccaacatggtgtcgtgctccttttgaacctgagggttttttgaggt |
27658411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University