View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6360_high_31 (Length: 270)
Name: NF6360_high_31
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_high_31 |
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| [»] scaffold0065 (1 HSPs) |
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| [»] scaffold0741 (1 HSPs) |
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Alignment Details
Target: scaffold0065 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 42588 - 42355
Alignment:
| Q |
21 |
aatatgagaactaataatcatccataaatacctgcaatctataattttgttcctctgcaaa-tgagaagagacaaaaattactgtatatacaaagtcaga |
119 |
Q |
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||||||||||| |||| |||||||||||||| |||||| |||||||||||||||||||| | ||||||||||||||||||||| |||||||| ||||||| |
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| T |
42588 |
aatatgagaacaaatagtcatccataaatac-tgcaatatataattttgttcctctgcagactgagaagagacaaaaattactttatatacagagtcaga |
42490 |
T |
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| Q |
120 |
acctcacaccgcccacatttcaggaatcagaggctccctattattcttagtaacacatacatttatccaaaaccaactcggagtagaatcataataaacc |
219 |
Q |
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|||||||||||||||||| | ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||| |
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| T |
42489 |
acctcacaccgcccacatgttaggaacgagaggctccccattattcttagtaacacatacatttctccaaaaccaactcggaataaaagcataataaacc |
42390 |
T |
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| Q |
220 |
ataggttccgcaataaataccaatg-cggattatg |
253 |
Q |
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||||||||||||||||||||| ||| ||||||||| |
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| T |
42389 |
ataggttccgcaataaatacccatgacggattatg |
42355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 26177795 - 26177577
Alignment:
| Q |
21 |
aatatgagaactaataatcatccataaatacctgcaatctataattttgttcctctgcaaa-tgagaagagacaaaaattactgtatatacaaagtcaga |
119 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||||||||| | ||||||| |
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| T |
26177795 |
aatatgagaacaaataatcatccataaatacctgcaatatataattttgttcctctgcagactaagaagagacaaaaattactgtatatatagagtcaga |
26177696 |
T |
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| Q |
120 |
acctcacaccgcccacatttcaggaatcagaggctccctattattcttagtaacacatacatttatccaaaaccaactcggagtagaatcataataaacc |
219 |
Q |
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| T |
26177695 |
acctcacaccgaccacatgtaagaaatgagaggctccctgttattcttagtaacacatacattcccccaaaaccaactcggaataaaagcataataaacc |
26177596 |
T |
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| Q |
220 |
ataggttccgcaataaata |
238 |
Q |
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||||||||||||||||||| |
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| T |
26177595 |
ataggttccgcaataaata |
26177577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 12686549 - 12686605
Alignment:
| Q |
185 |
tccaaaaccaactcggagtagaatcataataaaccataggttccgcaataaatacca |
241 |
Q |
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| T |
12686549 |
tccaaaaccaattcggaatagaatcatactccaccataggttctgcaataaaaacca |
12686605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 20303912 - 20304084
Alignment:
| Q |
21 |
aatatgagaactaataatcatccataaatacctgcaatctataattttgttcctctgcaaa-tgagaagagacaaaaattactgtatatacaaagtcaga |
119 |
Q |
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||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||| ||||| ||| |
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| T |
20303912 |
aatatgagaacaaataatcatctataaatacctgcaatatataattttgttcctctgcagactgagaagagacaaaaattactgtatatataaagttaga |
20304011 |
T |
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| Q |
120 |
acctcacaccgcccacatttcaggaatcagaggctccctattattcttagtaacacatacatttatccaaaac |
192 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20304012 |
acctcacaccgcccacatgtcaggaatgagaggctccctattattcttagtaacacatacattcctccaaaac |
20304084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 2289501 - 2289565
Alignment:
| Q |
180 |
atttatccaaaaccaactcggagtagaatcataataaaccataggttccgcaataaataccaatg |
244 |
Q |
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|||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
2289501 |
atttctccaaaaccaactcggaatagaagcataataaaccataggttcttcaataaataccaatg |
2289565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0741 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0741
Description:
Target: scaffold0741; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 6490 - 6401
Alignment:
| Q |
21 |
aatatgagaactaataatcatccataaatacctgcaatctataattttgttcctctgca-aatgagaagagacaaaaattactgtatata |
109 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
6490 |
aatatgagaacaaataatcatccataaatacctgcaatatataattttgttcctctgcagactgagaagagacaaaaattactgtatata |
6401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 37634695 - 37634794
Alignment:
| Q |
11 |
catctcgaagaatatgagaactaataatcatccataaatacctgcaatctataattttgttcctctgca-aatgagaagagacaaaaattactgtatata |
109 |
Q |
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|||| |||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||| |
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| T |
37634695 |
catcccgaaaaatatgagaactaataatcatccagaaatacctgcaatatataattttgttcctctgcatactgagaagagacaaaaattaccgtatata |
37634794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 1656800 - 1656718
Alignment:
| Q |
82 |
tgagaagagacaaaaattactgtatatacaaagtcagaacctcacaccgcccacatttcaggaatcagaggctccctattatt |
164 |
Q |
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||||||||||||||||| || ||||||||||| || ||||| ||||| |||| | | |||||| |||||||||||| |||| |
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| T |
1656800 |
tgagaagagacaaaaatcacagtatatacaaattccgaaccgcacacaacccagaggttaggaatgagaggctccctaatatt |
1656718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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