View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6360_high_33 (Length: 265)
Name: NF6360_high_33
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_high_33 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 24334918 - 24335153
Alignment:
| Q |
11 |
cacagaaaccatataaattaaactaacataaaatagaagaatttgagtaagaaagatatacatacactaatcaaaggtgtgtttggtttcagcttttgaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24334918 |
cacagaaaccatataaattaaactaacataaaatagaagaatttgagtaagaaagatatacatacactaatcaaaggtatgtttggtttcagcttttgaa |
24335017 |
T |
|
| Q |
111 |
cttgaactcaaaaaagcttcaaagcttcaatgcttctaaagtgttccaatttacaatacaagatcacaaaaagattaaagttgcttcaatcatcattttg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24335018 |
cttgaactcaaaaaagcttcaaagcttcaatgcttctaaagtgttccaatttacaatacaagatcacaaaaagattaaagttgcttcaatcatcactttg |
24335117 |
T |
|
| Q |
211 |
caaagtccaagaaactctatagtttgatggaaacatgt |
248 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24335118 |
caaagtccaagaaa--ctatagtttgatggaaacatgt |
24335153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University