View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6360_high_38 (Length: 246)
Name: NF6360_high_38
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_high_38 |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 10234249 - 10234148
Alignment:
| Q |
10 |
acatcatcattttaagacaatattttatcaatgggtcaatctttttagggcagaggaaatacttattatgagatggaacaatggttcaacatctcaaaac |
109 |
Q |
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| T |
10234249 |
acatcagcattttaagacaatattttatcaatgggtcaatctttttagggcagaggaaatacttattatgagatggaacaatggttcaacatctcaaaac |
10234150 |
T |
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| Q |
110 |
ac |
111 |
Q |
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|| |
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| T |
10234149 |
ac |
10234148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 10234064 - 10234027
Alignment:
| Q |
190 |
gaacgtggtatcctcttataatttttaatgaacaaaaa |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
10234064 |
gaacgtggtatcctcttataatttttaatgaacaaaaa |
10234027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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