View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6360_high_4 (Length: 770)
Name: NF6360_high_4
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 295 - 560
Target Start/End: Complemental strand, 27802877 - 27802613
Alignment:
| Q |
295 |
gtgaaatacttaaggaggagaacacaaatnnnnnnn-gatgttaagttgtattcttaggtattaagtgaatattttaaatttatgtttggatgttaaaat |
393 |
Q |
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| T |
27802877 |
gtgaaatacttaaggaggagaacacaaataaaaaaaagatgttaagttgtattcttaggtattaagtgaatattttaaatttatgtttggatgttaaaat |
27802778 |
T |
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| Q |
394 |
actatcttgtattatatgagataataatattctaacatatgattaatcaaacataacgaaaaactttgtctaatttcaataatctatatgtttaagtatg |
493 |
Q |
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| T |
27802777 |
actatcttgtattatatgagat---aatattctaacatatgattaatcaaacataacgaaaaactttgtctagtttcaataatctatatgtttaagtatg |
27802681 |
T |
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| Q |
494 |
tttcttta-tcttgagtctaaaaacttatttatatagtcctaacatcgtccaatgataaagatttttt |
560 |
Q |
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| T |
27802680 |
tttctttatttttgagtctaaaaacttatttatatagtcctaacatcgtccaatgataaagatttttt |
27802613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 544 - 749
Target Start/End: Complemental strand, 27802596 - 27802388
Alignment:
| Q |
544 |
aatgataaagattttttgtatctgtatttacgcacatacatgataaatatatccatatgcctgagttaggagataagatctcaagatagctaaatgtgaa |
643 |
Q |
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| T |
27802596 |
aatgataaagattttttgtatatgtatttacgcacatacatgataaatatatccatatgcttgagttaggagataagatctcaagatagctaaatgtgaa |
27802497 |
T |
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| Q |
644 |
tttgata---ttttgaaatatcacggtgtgactacattaaagtcacacactagattgaagctaacatttaaagtttaaaaaactgctatgaaaagggcta |
740 |
Q |
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| T |
27802496 |
tttgatatttttttgaaatatcacggtgtgactacattaaagtcacacactacattgaagctaacatttaaagtttaaaaaactactatgaaaagggcta |
27802397 |
T |
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| Q |
741 |
taaatgtac |
749 |
Q |
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||||||||| |
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| T |
27802396 |
taaatgtac |
27802388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 504 - 756
Target Start/End: Complemental strand, 27810005 - 27809753
Alignment:
| Q |
504 |
ttgagtctaaaaacttatttatatagtcctaacatcgtccaatgataaagattttttgtatctgtatttacgcacatacatgataaatatatccatatgc |
603 |
Q |
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||||||||||||| |||||||||||||||||||| | |||| || | || ||||||||||||||||||||||||||| ||||| ||||||||||||| | |
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| T |
27810005 |
ttgagtctaaaaagttatttatatagtcctaacagcttccattgctgaatattttttgtatctgtatttacgcacatccatgaaaaatatatccatactc |
27809906 |
T |
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| Q |
604 |
ctgagttaggagataagatctcaagatagctaaatgtgaatttgatattttgaaatatcacggtgtgactacattaaagtcacacactagattgaagcta |
703 |
Q |
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||||||| |||||| |||| ||||||| |||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
27809905 |
ctgagttgggagatgagatatcaagattgctaaatgtgaatttggtattttgaaatgtcacggtgtgaccacattaaagtcacagactagattgaagcta |
27809806 |
T |
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| Q |
704 |
acatttaaagtttaaaaaactgctatgaaaagggctataaatgtacggtgatg |
756 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27809805 |
acatttgaagcttaaaaaactgctatgaaaagggctataaatgtacggtgatg |
27809753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 448 - 749
Target Start/End: Complemental strand, 27799248 - 27798953
Alignment:
| Q |
448 |
aacgaaaaactttgtctaatttcaataatctatatgtttaagtatgtttctttatcttgagtctaaaaacttatttatatagtcctaacatcgtccaatg |
547 |
Q |
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|||| |||||||| |||||||||||| ||||||||||||||||||||||||| || ||||||| ||||| |||||||||||||||||||||| ||||||| |
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| T |
27799248 |
aacgtaaaactttatctaatttcaatgatctatatgtttaagtatgtttcttaatgttgagtcaaaaaaattatttatatagtcctaacatcttccaatg |
27799149 |
T |
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| Q |
548 |
ataaagattttttgtatctgtatttacgcacatacatgataaatatatccatatgcctgagttaggagataagatctcaagatagctaaatgtgaatttg |
647 |
Q |
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| T |
27799148 |
atgaa-tttttttttatttgtatttatgcatatacatgaaaaatatatccatat-----atttgggagataagatctcaaaataattaaatgagaatttg |
27799055 |
T |
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| Q |
648 |
atattttgaaatatcacggtgtgactacattaaagtcacacactagattgaagctaacatttaaagtttaaaaaactgctatgaaaagggctataaatgt |
747 |
Q |
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||||||||||||||||||||||||| |||||| | ||| |||||||||| |||||||| ||| ||||||| |||||| ||| ||| |||||||| |
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| T |
27799054 |
atattttgaaatatcacggtgtgaccacattagatgtacatcgtagattgaagttaacatttgaagcttaaaaatctgctacaaaaggggtaataaatgt |
27798955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 27803367 - 27803278
Alignment:
| Q |
19 |
ataaatgtcccagttttaaaccgctggagttaagatttttcaaatgctattcagaaaataaatgtgtttgatataaataaagatgatcaa |
108 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27803367 |
ataaatgtcccagttttaaactgccggagttaagatttttcaaatgccattcagaaaataaatgtgtttgatataaataaagatgatcaa |
27803278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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