View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6360_high_40 (Length: 243)
Name: NF6360_high_40
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 27359183 - 27358954
Alignment:
| Q |
1 |
caacgtgaaagagtcgacggtggtgcgtccggcggaggagacaccacgaaaggcgttatggaactccaacgtcgacttggtggttccaaattttcacaca |
100 |
Q |
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| T |
27359183 |
caacgtgaaagagtcgacggtggtgcgtccggcggaggagacaccacgaaaggcgttatggaactccaacgtcgacttggtggttccaaattttcacaca |
27359084 |
T |
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| Q |
101 |
ccaagcgtgtacttttacaggccaaacggcacgtccaatttcttcgatgctaagattatgaaggaagctctaagcaaggtgctggtcccgttctatccaa |
200 |
Q |
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| T |
27359083 |
ccaagcgtgtacttttacaggccaaacggcacgtccaatttcttcgatgctaagattatgaaggaagctctaagcaaggtgctggtcccgttctatccaa |
27358984 |
T |
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| Q |
201 |
tggcagcccgtctccgccgagatgatgatg |
230 |
Q |
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| T |
27358983 |
tggcagcccgtctccgccgagatgaagatg |
27358954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 45407923 - 45408152
Alignment:
| Q |
1 |
caacgtgaaagagtcgacggtggtgcgtccggcggaggagacaccacgaaaggcgttatggaactccaacgtcgacttggtggttccaaattttcacaca |
100 |
Q |
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| T |
45407923 |
caacgtgaaagagtcgatggtggtgcgtccggcggaggagacaccacgaaaggcgttatggaattccaacgtcgacttggtggttccaaattttcacaca |
45408022 |
T |
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| Q |
101 |
ccaagcgtgtacttttacaggccaaacggcacgtccaatttcttcgatgctaagattatgaaggaagctctaagcaaggtgctggtcccgttctatccaa |
200 |
Q |
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| T |
45408023 |
ccaagcgtgtacttttacaggccaaacggcacgtccaatttcttcgatgctaagattatgaaggaagctctaagcaaggtgctggtcctgttctatccaa |
45408122 |
T |
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| Q |
201 |
tggcagcccgtctccgccgagatgatgatg |
230 |
Q |
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| T |
45408123 |
tggcagcccgtctccgccgagatgaagatg |
45408152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 1108097 - 1108167
Alignment:
| Q |
134 |
tccaatttcttcgatgctaagattatgaaggaagctctaagcaaggtgctggtcccgttctatccaatggc |
204 |
Q |
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| T |
1108097 |
tccaatttcttcaatgccaagattatgaaggaagctctcagctaggtgcttgtcccgttctatccaatggc |
1108167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 204
Target Start/End: Original strand, 1127564 - 1127709
Alignment:
| Q |
59 |
tggaactccaacgtcgacttggtggttccaaattttcacacaccaagcgtgtacttttacaggccaaacggcacgtccaatttcttcgatgctaagatta |
158 |
Q |
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| T |
1127564 |
tggaattccaacgttgatttggtggtaccgaatttccatacaccaagtgtttacttttatagacctaatggtgcttccaatttctttgatgccaaggttc |
1127663 |
T |
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| Q |
159 |
tgaaggaagctctaagcaaggtgctggtcccgttctatccaatggc |
204 |
Q |
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| T |
1127664 |
ttaaagaagctcttagcaaggtgcttgtcccgttttatccaatggc |
1127709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 31967273 - 31967203
Alignment:
| Q |
134 |
tccaatttcttcgatgctaagattatgaaggaagctctaagcaaggtgctggtcccgttctatccaatggc |
204 |
Q |
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| T |
31967273 |
tccaaattcttcgacaccaagattatgaaggaagctctcagcaaagtgcttgtctcattctatccaatggc |
31967203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 32016592 - 32016524
Alignment:
| Q |
134 |
tccaatttcttcgatgctaagattatgaaggaagctctaagcaaggtgctggtcccgttctatccaatg |
202 |
Q |
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||||||||||| || || |||||||||||||||||||| | |||||||| ||| ||||||||||||| |
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| T |
32016592 |
tccaatttcttggacgccaagattatgaaggaagctctcattaaggtgcttgtcttgttctatccaatg |
32016524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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