View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6360_high_41 (Length: 243)

Name: NF6360_high_41
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6360_high_41
NF6360_high_41
[»] chr4 (11 HSPs)
chr4 (1-225)||(2326932-2327156)
chr4 (1-76)||(21691341-21691416)
chr4 (1-74)||(2635054-2635127)
chr4 (1-74)||(49138956-49139029)
chr4 (1-73)||(54705512-54705584)
chr4 (1-76)||(29904121-29904196)
chr4 (3-73)||(33843583-33843653)
chr4 (1-66)||(35064962-35065027)
chr4 (1-58)||(46344952-46345009)
chr4 (9-70)||(50061764-50061825)
chr4 (6-74)||(33456265-33456333)
[»] chr6 (9 HSPs)
chr6 (1-73)||(5724751-5724823)
chr6 (1-76)||(4910797-4910872)
chr6 (1-74)||(7952830-7952903)
chr6 (1-73)||(1499758-1499830)
chr6 (10-74)||(31710512-31710576)
chr6 (1-71)||(31812203-31812273)
chr6 (9-61)||(3481943-3481995)
chr6 (25-73)||(7280357-7280405)
chr6 (4-72)||(34910896-34910964)
[»] chr3 (11 HSPs)
chr3 (1-77)||(25359694-25359770)
chr3 (1-76)||(7262787-7262862)
chr3 (2-70)||(52141367-52141435)
chr3 (13-73)||(52363957-52364017)
chr3 (1-74)||(3776430-3776503)
chr3 (1-70)||(12674908-12674977)
chr3 (2-79)||(21007763-21007840)
chr3 (1-73)||(3845233-3845305)
chr3 (2-74)||(40339076-40339148)
chr3 (6-74)||(51285450-51285518)
chr3 (1-77)||(52925732-52925808)
[»] chr2 (6 HSPs)
chr2 (1-79)||(33047673-33047751)
chr2 (1-79)||(7629748-7629826)
chr2 (1-78)||(3716756-3716833)
chr2 (1-42)||(8800818-8800859)
chr2 (1-74)||(32595887-32595960)
chr2 (3-76)||(42774958-42775031)
[»] chr8 (6 HSPs)
chr8 (11-76)||(10367890-10367955)
chr8 (18-76)||(7533690-7533748)
chr8 (1-55)||(13384775-13384829)
chr8 (1-73)||(32100965-32101037)
chr8 (1-74)||(26668443-26668516)
chr8 (9-70)||(44141186-44141247)
[»] chr1 (7 HSPs)
chr1 (1-70)||(36780238-36780307)
chr1 (2-70)||(47322028-47322096)
chr1 (1-76)||(45660870-45660944)
chr1 (1-77)||(36529393-36529469)
chr1 (1-71)||(35681824-35681894)
chr1 (6-74)||(14644588-14644656)
chr1 (1-73)||(15478122-15478194)
[»] chr5 (6 HSPs)
chr5 (1-70)||(39097159-39097228)
chr5 (1-75)||(22226357-22226431)
chr5 (1-74)||(35108130-35108203)
chr5 (1-73)||(5468666-5468737)
chr5 (1-77)||(11647971-11648046)
chr5 (1-57)||(35957862-35957918)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-73)||(31718-31790)
[»] chr7 (1 HSPs)
chr7 (1-74)||(45004876-45004949)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 2326932 - 2327156
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacactaaaaacgattgtttaaataacatctc 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| || ||| ||||||||||||    
T  2326932 caaacatgtcataatcaattctatacctccataattaattatggtcccactaaaagtgaaaccaaacatacactaaaaacaatcgttcaaataacatctc 2327031  T
Q  101 atttaatttattgagcgaatcgattataccaaatgactcgaatcaataacagtaatgactggattaactaattgattataattcttctttaaaagaccct 200  Q
    ||||||| || ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327032 atttaatctactgagcgaatcgattataccgaatgactcgaatcaataatagtaatgactggattaactaattgattataattcttctttaaaagaccct 2327131  T
Q  201 ttttagactttattcattcacccac 225  Q
     ||||||||||||||||||||||||    
T  2327132 atttagactttattcattcacccac 2327156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 21691341 - 21691416
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacactaa 76  Q
    |||| |||||||||||||||||| ||||||| ||| |||| ||| ||||||| ||||| |||||||||| ||||||    
T  21691341 caaatatgtcagaatcaattctacacctccagaatcaattctggtccctctagaagtggaaccaaacatgcactaa 21691416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2635127 - 2635054
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacact 74  Q
    ||||||||||| |||||||| || || || | ||| |||| ||| |||||||||||||||||||||||||||||    
T  2635127 caaacatgtcaaaatcaattttacacttctagaatcaattttggtccctctaaaagtgaaaccaaacatacact 2635054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 49138956 - 49139029
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacact 74  Q
    ||||||||||||||||||||||| ||||| | ||| |||| ||||| || || ||||| |||||||||||||||    
T  49138956 caaacatgtcagaatcaattctacacctctagaatcaattttggccactttagaagtggaaccaaacatacact 49139029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 54705512 - 54705584
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacac 73  Q
    |||||||||| ||||||||| ||||||| ||||   |||| ||||||||||| ||||| ||||||||||||||    
T  54705512 caaacatgtctgaatcaattatataccttcatagccaattttggcccctctagaagtggaaccaaacatacac 54705584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 29904196 - 29904121
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacactaa 76  Q
    ||||||||| |||||||||| |||| ||| | ||| |||| |||  |||||| |||||||||||||||||||||||    
T  29904196 caaacatgttagaatcaattttatatctctagaatcaattgtggatcctctagaagtgaaaccaaacatacactaa 29904121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 33843653 - 33843583
Alignment:
Q  3 aacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacac 73  Q
    ||||| ||||||| ||||||| ||||| | ||| |||| ||| ||||||| ||||||||||||||||||||    
T  33843653 aacatttcagaattaattctacacctctagaatcaattttggaccctctagaagtgaaaccaaacatacac 33843583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 35065027 - 35064962
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaa 66  Q
    |||| |||||| ||||||||||| ||||||||||| |||| || |||||| | ||||| |||||||    
T  35065027 caaaaatgtcataatcaattctacacctccataatcaattttgacccctcgagaagtggaaccaaa 35064962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 46344952 - 46345009
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtg 58  Q
    ||||||||||||||| |||| || ||||||||||| |||| ||| ||||||| |||||    
T  46344952 caaacatgtcagaattaattatacacctccataatcaattttgggccctctagaagtg 46345009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 50061764 - 50061825
Alignment:
Q  9 tcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacata 70  Q
    ||||||||||||||| ||||||| ||| |||| |||  |||||| ||||| |||||||||||    
T  50061764 tcagaatcaattctagacctccagaatcaattttggttcctctagaagtggaaccaaacata 50061825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 33456333 - 33456265
Alignment:
Q  6 atgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacact 74  Q
    |||||| ||||||||||| || | || ||| |||||| | ||||||| ||||| |||||||||||||||    
T  33456333 atgtcataatcaattctacacattcaaaatcaattatagtccctctagaagtggaaccaaacatacact 33456265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 5724751 - 5724823
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacac 73  Q
    ||||||||||||||||||||||| || || | |||||||| ||||||||||| ||||| ||||||||||||||    
T  5724751 caaacatgtcagaatcaattctacacttctagaattaattttggcccctctagaagtggaaccaaacatacac 5724823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 4910872 - 4910797
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacactaa 76  Q
    ||||||||||||||||||||||| || | || ||| |||||| | | ||||||||||| |||||||||||||||||    
T  4910872 caaacatgtcagaatcaattctacacattcagaatcaattatagtctctctaaaagtggaaccaaacatacactaa 4910797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 7952830 - 7952903
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacact 74  Q
    ||||||||||| |||||||| || |||||||||||||||| | ||| ||||| ||||| ||| || ||||||||    
T  7952830 caaacatgtcataatcaattttacacctccataattaattttagcctctctagaagtggaactaatcatacact 7952903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 1499830 - 1499758
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacac 73  Q
    |||||||| || ||||||||||| || | ||||||||||| ||| |||  || ||||||||||||||||||||    
T  1499830 caaacatgccataatcaattctacacttacataattaattttggtcccaatagaagtgaaaccaaacatacac 1499758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 31710512 - 31710576
Alignment:
Q  10 cagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacact 74  Q
    |||||||||||||| || |||| ||| |||||||| | ||||||||| | |||||||||||||||    
T  31710512 cagaatcaattctacacatccacaatcaattatggtctctctaaaagaggaaccaaacatacact 31710576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 31812273 - 31812203
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatac 71  Q
    ||||||||||| ||||||||||| ||||| ||||| |||| ||    ||| ||||||||||||||||||||    
T  31812273 caaacatgtcaaaatcaattctagacctctataatgaattttgcttactccaaaagtgaaaccaaacatac 31812203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 3481995 - 3481943
Alignment:
Q  9 tcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaa 61  Q
    ||||||||||||||| || | |||||| |||||||  ||||||||||||||||    
T  3481995 tcagaatcaattctacacatacataatcaattatgatccctctaaaagtgaaa 3481943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 7280405 - 7280357
Alignment:
Q  25 acctccataattaattatggcccctctaaaagtgaaaccaaacatacac 73  Q
    ||||||||||| ||||||| |||||||||||||| || |||||| ||||    
T  7280405 acctccataatcaattatgacccctctaaaagtggaatcaaacacacac 7280357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 34910964 - 34910896
Alignment:
Q  4 acatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacataca 72  Q
    |||||| || |||||||||| ||||| | |||  ||| ||||||||||| ||||||||||||| |||||    
T  34910964 acatgttaggatcaattctacacctctagaatcgattttggcccctctagaagtgaaaccaaaaataca 34910896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 25359694 - 25359770
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacactaaa 77  Q
    ||||||||  |||| |||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||| ||||    
T  25359694 caaacatggtagaagcaattctatacctccataatcaattctggccactctaaaagtggaaccaaacatacattaaa 25359770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 7262862 - 7262787
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacactaa 76  Q
    ||||||||||||||||||||||  ||||| | ||| |||| |||||| ||||| ||||||||||||||||||||||    
T  7262862 caaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacactaa 7262787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 52141367 - 52141435
Alignment:
Q  2 aaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacata 70  Q
    |||||| |||||||| |||||| ||||| | ||| |||||||| ||||||| ||||| |||||||||||    
T  52141367 aaacatatcagaatctattctacacctcaaaaatcaattatggtccctctagaagtggaaccaaacata 52141435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 52364017 - 52363957
Alignment:
Q  13 aatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacac 73  Q
    |||||||| || ||||| ||||| |||| ||| ||||||||||||| ||||||||||||||    
T  52364017 aatcaattatacacctctataatcaattttggtccctctaaaagtggaaccaaacatacac 52363957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3776503 - 3776430
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacact 74  Q
    ||||||||||| ||||||||||| ||||| ||||  |||| || | |||| ||||||| ||||||| |||||||    
T  3776503 caaacatgtcaaaatcaattctacacctctataaccaattttgtctcctccaaaagtggaaccaaatatacact 3776430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 12674977 - 12674908
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacata 70  Q
    ||||||||| || |||||||||| ||||||| ||| |||| |||||| ||||| | | ||||||||||||    
T  12674977 caaacatgttaggatcaattctacacctccagaatcaattttggcccatctaagactaaaaccaaacata 12674908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 21007763 - 21007840
Alignment:
Q  2 aaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacactaaaaa 79  Q
    |||||||||| |||||||| |||| ||  | ||| |||| |||| |||| ||||||||||||||| || |||||||||    
T  21007763 aaacatgtcaaaatcaattatatatctttaaaatcaattttggctcctccaaaagtgaaaccaaatatccactaaaaa 21007840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 3845233 - 3845305
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacac 73  Q
    ||||||||||| ||||||||||| ||||| | ||| |||| |||   ||| ||||||| ||||||||||||||    
T  3845233 caaacatgtcaaaatcaattctacacctctagaatcaattttggttactccaaaagtggaaccaaacatacac 3845305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 40339148 - 40339076
Alignment:
Q  2 aaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacact 74  Q
    |||||||||| |||||||| ||  |||| | ||| |||| |||||| || |||||| ||||||||||||||||    
T  40339148 aaacatgtcaaaatcaattatactcctctaaaatcaattttggcccttccaaaagttaaaccaaacatacact 40339076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 51285518 - 51285450
Alignment:
Q  6 atgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacact 74  Q
    |||||| ||||||||||| ||||| | ||||||||  |||  ||| ||||||| |||||||||||||||    
T  51285518 atgtcaaaatcaattctacacctctagaattaatttcggctactcaaaaagtggaaccaaacatacact 51285450  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 52925732 - 52925808
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacactaaa 77  Q
    ||||||||||| |||||||| || ||||| | ||| |||| || | |||| ||||||| |||| |||||||||||||    
T  52925732 caaacatgtcaaaatcaattatacacctctagaatcaattttgactcctccaaaagtggaaccgaacatacactaaa 52925808  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 33047673 - 33047751
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacactaaaaa 79  Q
    ||||||||| ||||||||||||| ||||||| ||| |||| ||| ||||||| ||| ||||||||||||| ||||||||    
T  33047673 caaacatgtgagaatcaattctacacctccaaaatcaattttggtccctctagaagcgaaaccaaacataaactaaaaa 33047751  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 7629826 - 7629748
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacactaaaaa 79  Q
    |||||||| || ||||||||||| ||||| | ||| |||  |||| |||| ||||||| ||||||||||||||||||||    
T  7629826 caaacatgacaaaatcaattctacacctctagaatcaatcttggctcctccaaaagtggaaccaaacatacactaaaaa 7629748  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 3716756 - 3716833
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacactaaaa 78  Q
    |||| |||||||||| ||||||||||||| | ||| |||| || |||||| |||||  |||||||||||||| |||||    
T  3716756 caaatatgtcagaattaattctatacctctaaaatcaattttgtcccctcaaaaagctaaaccaaacatacattaaaa 3716833  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8800818 - 8800859
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattat 42  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||    
T  8800818 caaacatatcagaatcaattctatacctccaaaatcaattat 8800859  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 32595960 - 32595887
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacact 74  Q
    ||||||||||||||   ||| || ||| ||||||| |||||||| ||||||| || |||||||||| |||||||    
T  32595960 caaacatgtcagaaatgattttacaccaccataatcaattatggtccctctagaattgaaaccaaatatacact 32595887  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 42774958 - 42775031
Alignment:
Q  3 aacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacactaa 76  Q
    ||||||||| ||||||||||||||||| | ||| |||| ||||  | ||| |||| |||||| |||||||||||    
T  42774958 aacatgtcaaaatcaattctatacctctagaatcaattttggctaccctagaagttaaaccacacatacactaa 42775031  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 10367955 - 10367890
Alignment:
Q  11 agaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacactaa 76  Q
    ||||||||||||||| ||||||||| |||| ||||||||||| ||||  |||||||||||||||||    
T  10367955 agaatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacatacactaa 10367890  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 7533748 - 7533690
Alignment:
Q  18 attctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacactaa 76  Q
    |||||| ||||||| |||||||| ||||||||| ||||||| ||||||||||| |||||    
T  7533748 attctacacctccagaattaattttggcccctccaaaagtggaaccaaacatatactaa 7533690  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13384775 - 13384829
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaa 55  Q
    ||||||||||||||||||||||| ||||||| ||| |||||||| | ||||||||    
T  13384775 caaacatgtcagaatcaattctacacctccaaaatcaattatggtcactctaaaa 13384829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 32101037 - 32100965
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacac 73  Q
    ||||||||||||||||||||||| || | || ||| || | | | ||||||||||||| ||||||||||||||    
T  32101037 caaacatgtcagaatcaattctacacattcagaatcaactctagtccctctaaaagtggaaccaaacatacac 32100965  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 26668516 - 26668443
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacact 74  Q
    ||||||||| ||||||||||||| | ||||| ||||||| | |||||||||| ||||  |||| || |||||||    
T  26668516 caaacatgttagaatcaattctacatctccagaattaataacggcccctctagaagttgaaccgaaaatacact 26668443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 44141186 - 44141247
Alignment:
Q  9 tcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacata 70  Q
    ||||||||||||||| ||||||| ||| |||| |||  |||||| ||||| |||||||||||    
T  44141186 tcagaatcaattctagacctccagaatcaattttggttcctctagaagtggaaccaaacata 44141247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 36780238 - 36780307
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacata 70  Q
    ||||||| ||| ||||||||||| ||||||||||| |||||||| |||||||||||| ||| ||||||||    
T  36780238 caaacatatcaaaatcaattctacacctccataatcaattatggtccctctaaaagtaaaatcaaacata 36780307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 47322028 - 47322096
Alignment:
Q  2 aaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacata 70  Q
    |||||||||| ||||||||||| ||||||| ||| ||||||   | |||||||||||||||||||||||    
T  47322028 aaacatgtcaaaatcaattctacacctccacaataaattataatctctctaaaagtgaaaccaaacata 47322096  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 45660870 - 45660944
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacactaa 76  Q
    ||||||||||||||||||||||  ||||||| ||| |||| ||||||||| | ||||| ||| |||||||||||||    
T  45660870 caaacatgtcagaatcaattcttcacctcca-aatcaattttggcccctccagaagtggaacgaaacatacactaa 45660944  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 36529469 - 36529393
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacactaaa 77  Q
    ||||||||||| ||| ||||||| |  || | |||||||| |||| ||||||||||||||| |||||||||| ||||    
T  36529469 caaacatgtcaaaattaattctacatttctaaaattaattttggcacctctaaaagtgaaatcaaacatacattaaa 36529393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 35681894 - 35681824
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatac 71  Q
    |||||||||||||||||||  || || || | ||| || | || |||||||||||||||||||||||||||    
T  35681894 caaacatgtcagaatcaatgttacacatctaaaatcaactttgacccctctaaaagtgaaaccaaacatac 35681824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 14644656 - 14644588
Alignment:
Q  6 atgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacact 74  Q
    |||||| |||||||| || | ||||||||| |||| || ||||| |||||||  |||||||||||||||    
T  14644656 atgtcaaaatcaattttacatctccataatcaattttgtcccctttaaaagttgaaccaaacatacact 14644588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 15478122 - 15478194
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacac 73  Q
    ||||||||||| ||||||||||| ||| | | ||| || | |||| |||| ||||||| ||||||||||||||    
T  15478122 caaacatgtcaaaatcaattctacaccgctaaaatcaagtttggctcctccaaaagtggaaccaaacatacac 15478194  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 39097228 - 39097159
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacata 70  Q
    ||||||||||| ||||||||||| ||||| ||||| ||||  || | |||||||||||||||||||||||    
T  39097228 caaacatgtcaaaatcaattctacacctctataatcaatttcggtctctctaaaagtgaaaccaaacata 39097159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 22226357 - 22226431
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacacta 75  Q
    ||||||||||||||||||||||| || |||| ||| |||||| |  | |||||||||| || |||||||||||||    
T  22226357 caaacatgtcagaatcaattctacacgtccaaaatcaattatagttcgtctaaaagtggaatcaaacatacacta 22226431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 35108203 - 35108130
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacact 74  Q
    |||| ||||||||||||||| || || |||| ||| |||| || || ||||||||||||||||||| |||||||    
T  35108203 caaatatgtcagaatcaattatacacttccaaaatcaattttgacctctctaaaagtgaaaccaaagatacact 35108130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 5468737 - 5468666
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacac 73  Q
    ||||||||||| ||||||| ||| ||||| | ||| ||||||| ||||| |||||||| ||||||||||||||    
T  5468737 caaacatgtcataatcaat-ctacacctctagaatcaattatgacccctttaaaagtggaaccaaacatacac 5468666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 11648046 - 11647971
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacactaaa 77  Q
    ||||||||||| |||||||| || ||| ||| ||| |||||||| ||||||| ||||| | ||||| ||||||||||    
T  11648046 caaacatgtcaaaatcaattatacaccaccaaaatcaattatggtccctctagaagtggagccaaa-atacactaaa 11647971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 35957862 - 35957918
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagt 57  Q
    |||||||||||||||||||| || ||| | | |||||||||| |||| |||||||||    
T  35957862 caaacatgtcagaatcaattttacaccactaaaattaattatagcccatctaaaagt 35957918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 31790 - 31718
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacac 73  Q
    ||||||||||||||||||||||| ||||| | ||| |||| ||| | ||||| ||||| ||||||||||||||    
T  31790 caaacatgtcagaatcaattctacacctctagaatcaattttggtcactctagaagtggaaccaaacatacac 31718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 45004949 - 45004876
Alignment:
Q  1 caaacatgtcagaatcaattctatacctccataattaattatggcccctctaaaagtgaaaccaaacatacact 74  Q
    ||||||||||| ||||||||||| ||||| | ||| |||| |||||| | || ||||||||||||| |||||||    
T  45004949 caaacatgtcaaaatcaattctacacctctagaatcaattttggcccttttagaagtgaaaccaaatatacact 45004876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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