View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6360_high_42 (Length: 229)
Name: NF6360_high_42
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 39785829 - 39786020
Alignment:
| Q |
21 |
taatagaccagtaactggccttagattacaattggaagggagtagaagcaaccggttggccattcatctgcagcatctagcttccctacccaagtcctta |
120 |
Q |
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| T |
39785829 |
taatagaccagtaactggccttagattacaattggaagggagtagaagcaaccggttggccattcatctgcagcatctagcttccttacccaagtcctta |
39785928 |
T |
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| Q |
121 |
ccacttgcagacaatgcaaatgcatatttatc--gtgactcatacagctgtaccttccataagaaagtgaaacggaattgcttttcatatgt |
210 |
Q |
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| T |
39785929 |
ccacttgcagacaatgcaaatgcatatttatcttgtgactcatacagctgtaccttccataagaaagtgaaacggaactgcttttcatatgt |
39786020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 39791428 - 39791628
Alignment:
| Q |
25 |
agaccagtaactggccttagattacaattggaagggagtagaagcaaccggttggccattcatctgcagcatctagcttccctacccaagtccttaccac |
124 |
Q |
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| T |
39791428 |
agaccagtaactggccttagattacaattggaagggagtagaagcaaccggttggccattcatctgcagcatctggcttccctacccaagtccttaccac |
39791527 |
T |
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| Q |
125 |
ttgcagacaatgcaaatgcatatttatc--gtgactcatacagctgtaccttccataagaaagtgaaacggaattgcttttcatatgtctgtgctcctcc |
222 |
Q |
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| T |
39791528 |
tcgcggacaatgaaaatacttatttatcttgtaactcgtacagctgtaacttccataagaaagtgaaatggaactgcttttcatatatctgtactgctcc |
39791627 |
T |
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| Q |
223 |
t |
223 |
Q |
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| T |
39791628 |
t |
39791628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 39777349 - 39777540
Alignment:
| Q |
21 |
taatagaccagtaactggccttagattacaattggaagggagtagaagcaaccggttggccattcatctgcagcatctagcttccctacccaagtcctta |
120 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||| |||| ||||||||| |
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| T |
39777349 |
taatagaccagtaattggcctgagattacaattggaagggagaagaagcaaccggttggccattcaccttcagcatctgacttctttaccaaagtcctta |
39777448 |
T |
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| Q |
121 |
ccacttgcagacaatgcaaatgcatatttatc--gtgactcatacagctgtaccttccataagaaagtgaaacggaattgcttttcatatgt |
210 |
Q |
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| T |
39777449 |
ccactcgcagacaacgcaaatgcctatttgtcttgtgactcctatagctgcaatttccataagaaagtgaaatggagctgcttttcatatgt |
39777540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 39795857 - 39796041
Alignment:
| Q |
28 |
ccagtaactggccttagattacaattggaagggagtagaagcaaccggttggccattcatctgcagcatctagcttccctacccaagtccttaccacttg |
127 |
Q |
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| T |
39795857 |
ccagtaactggccttagattacaattggaagggaaaagaagcaaccggttggccattaatctgcagcatctggtttctctacccaagtccttaccactag |
39795956 |
T |
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| Q |
128 |
cagacaatgcaaatgcatatt--tatcgtgactcatacagctgtaccttccataagaaagtgaaacggaattgcttttcatatgt |
210 |
Q |
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| T |
39795957 |
cagacaatgcacctgcttattcgtcttgtgactcgtatagctgcaagtaccacaagaaactgaaatggaactgcttttcatatgt |
39796041 |
T |
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