View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6360_high_6 (Length: 541)
Name: NF6360_high_6
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_high_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 14 - 541
Target Start/End: Original strand, 51341875 - 51342402
Alignment:
| Q |
14 |
caaaggcgaaagctggcataacacaaagtggaaaaatggaataaaagacccaaccagggaggaaatcatagaccaaaacaacaccagacatagtagaaaa |
113 |
Q |
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| T |
51341875 |
caaaggcgaaggctggcataacacaaagtggaaaaatggaataaaagacccaaccagggaggaaatcatagaccaaaacaacaccagacatagtagaaaa |
51341974 |
T |
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| Q |
114 |
cagacccatgaccaaagcagaggcataaaggaacaagtatcctattgtcatccttgttatcctcgaatacacataacctcctgttaacctccaagttgaa |
213 |
Q |
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| T |
51341975 |
caaacccatgaccaaagcagaggcataaaggaacaagtatcctattgtcatccttgttatcctcgaatacacataacctcctgttaacctccaagttgaa |
51342074 |
T |
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| Q |
214 |
gggagaataactgaggtgaataaaagtactgatgatgcacaaaaactcactccaactccaattgatagaatgaatatcatgtaccatatgtcatcacaaa |
313 |
Q |
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| T |
51342075 |
gggagaataactgaggtgaataaaagtaccgatgatgcacaaaaactcactccaactccaattgatagaatgaatatcatgtaccatatgtcatcacaaa |
51342174 |
T |
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| Q |
314 |
ataatattgactttggaccgacaggattagtacgaattgtgagcgctccagtgatccctaatgtgataataagtgttgcaactactataaaagtatttga |
413 |
Q |
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| T |
51342175 |
ataatattgactttggaccgacaggattagtacgaattgtgagcgctccagtgatccctaatgtgataataagtgttgcaactactataaaagtatttga |
51342274 |
T |
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| Q |
414 |
tattccattcacttcttctacagctttttcagatgatcgtttgtgtttttcataaaacaattctattggggtcataccatcatgatttttcatgtttttg |
513 |
Q |
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| T |
51342275 |
tattccattcacttcttctacagctttttcagacgatcgtttgtgtttttcataaaacaattctattggggtcataccatcatgatttttcatgtttttg |
51342374 |
T |
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| Q |
514 |
aatgtaggaggagttatcttctccactt |
541 |
Q |
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| T |
51342375 |
aatgtaggaggagttatcttctccactt |
51342402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 541
Target Start/End: Original strand, 51318652 - 51318796
Alignment:
| Q |
397 |
actataaaagtatttgatattccattcacttcttctacagctttttcagatgatcgtttgtgtttttcataaaacaattctattggggtcataccatcat |
496 |
Q |
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| T |
51318652 |
actataaaagtatttgcagttccattcacttcagttacagctttctcatatgattctttatgttccttgtaaaatatttctgttggggtcataccatttt |
51318751 |
T |
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| Q |
497 |
gatttttcatgtttttgaatgtaggaggagttatcttctccactt |
541 |
Q |
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| T |
51318752 |
tattttccatgctttttaatgtgggaggtactatcttctccactt |
51318796 |
T |
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