View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6360_low_10 (Length: 459)

Name: NF6360_low_10
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6360_low_10
NF6360_low_10
[»] chr2 (6 HSPs)
chr2 (32-371)||(16920035-16920380)
chr2 (205-256)||(16918478-16918529)
chr2 (243-300)||(44913375-44913432)
chr2 (260-314)||(7429892-7429946)
chr2 (159-217)||(16918655-16918713)
chr2 (215-283)||(44142281-44142349)
[»] chr6 (7 HSPs)
chr6 (211-448)||(287448-287688)
chr6 (20-124)||(287001-287105)
chr6 (161-402)||(2742657-2742898)
chr6 (165-214)||(287105-287154)
chr6 (241-313)||(29299176-29299248)
chr6 (215-350)||(32745713-32745848)
chr6 (245-313)||(29123253-29123321)
[»] chr3 (1 HSPs)
chr3 (232-313)||(9704362-9704443)
[»] chr7 (2 HSPs)
chr7 (241-345)||(5441499-5441603)
chr7 (241-345)||(5450509-5450613)
[»] chr5 (4 HSPs)
chr5 (261-313)||(27174371-27174423)
chr5 (214-298)||(42835378-42835462)
chr5 (261-315)||(9052383-9052437)
chr5 (260-313)||(37512027-37512080)
[»] chr1 (1 HSPs)
chr1 (260-315)||(367938-367993)
[»] chr8 (1 HSPs)
chr8 (243-300)||(4027056-4027113)


Alignment Details
Target: chr2 (Bit Score: 131; Significance: 9e-68; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 32 - 371
Target Start/End: Complemental strand, 16920380 - 16920035
Alignment:
Q  32 caaaatatcaataaaactatcatcctcataaaatggaggtggccaatctacttttatcatattctgaaacctctctcctgaaagtaaatacaatgtagag 131  Q
    ||||||||||||||||| ||||||||||| ||||||||| |||||||||| ||| | |||| ||| ||||||||| || ||||||| |||||| |||  |    
T  16920380 caaaatatcaataaaacgatcatcctcatcaaatggaggaggccaatctaatttgaccataatctcaaacctctcaccagaaagtatatacaaagtatcg 16920281  T
Q  132 caaaatccttcacctggcaaa------tttatctggtttaggaggatagaagtatcatcgtaataaaaatgattattaaaaaggaagtagttgcgataca 225  Q
     ||||| ||||||| ||||||      ||| |  |||||||||||||||||||  |||| |||||| ||||||||||| ||||||| |||||||||||||    
T  16920280 taaaatgcttcaccgggcaaaggattatttgtaaggtttaggaggatagaagtgccatcataataagaatgattattagaaaggaaatagttgcgataca 16920181  T
Q  226 tggtcgtaaaatgaagattttcaaacaagaaagtccatgatttgcgtacacatccaaatcgttttaaagattttagaggcaattttgacaagatagtgaa 325  Q
    ||||| | |||||||| ||||||||||| || | ||||||||| ||||| ||||||||||| || |||||||||||||| ||| |||| | || || |||    
T  16920180 tggtcatgaaatgaaggttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaatgttgaaaggacagagaa 16920081  T
Q  326 ggcatgatcttcaggtatatggttgctaaacttaagatttttggca 371  Q
    | || ||||||||||||||| |||||||| ||||| |||| |||||    
T  16920080 gacaagatcttcaggtatattgttgctaaccttaacatttgtggca 16920035  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 16918529 - 16918478
Alignment:
Q  205 aaaggaagtagttgcgatacatggtcgtaaaatgaagattttcaaacaagaa 256  Q
    |||||||||||||| ||||||||||| | |||||||||||||||||||||||    
T  16918529 aaaggaagtagttgtgatacatggtcatgaaatgaagattttcaaacaagaa 16918478  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 44913375 - 44913432
Alignment:
Q  243 ttttcaaacaagaaagtccatgatttgcgtacacatccaaatcgttttaaagatttta 300  Q
    |||||||| ||||||||||||| ||| | ||| |||||||||||||||||||||||||    
T  44913375 ttttcaaataagaaagtccatggtttacatacgcatccaaatcgttttaaagatttta 44913432  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 7429892 - 7429946
Alignment:
Q  260 ccatgatttgcgtacacatccaaatcgttttaaagattttagaggcaattttgac 314  Q
    ||||||||||| ||| ||||||||||| || ||||||||||  ||||||||||||    
T  7429892 ccatgatttgcatacgcatccaaatcgcttcaaagattttattggcaattttgac 7429946  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 16918713 - 16918655
Alignment:
Q  159 tggtttaggaggatagaagtatcatcgtaataaaaatgattattaaaaaggaagtagtt 217  Q
    ||||||| ||||||||||||| |||| |||||| |||  |||||| |||||||||||||    
T  16918713 tggtttaagaggatagaagtaccatcataataagaattgttattagaaaggaagtagtt 16918655  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 44142281 - 44142349
Alignment:
Q  215 gttgcgatacatggtcgtaaaatgaagattttcaaacaagaaagtccatgatttgcgtacacatccaaa 283  Q
    |||||| ||||||||| | ||||||   |||||||||||||  | ||||||||||||||| ||||||||    
T  44142281 gttgcggtacatggtcatgaaatgagagttttcaaacaagatggaccatgatttgcgtacgcatccaaa 44142349  T

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Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 211 - 448
Target Start/End: Original strand, 287448 - 287688
Alignment:
Q  211 agtagttgcgatacatggtcgtaaaatgaagattttcaaacaagaaagtccatgatttgcgtacacatccaaatcgttttaaagattttagaggcaattt 310  Q
    |||||||||||||||||||| | || ||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  287448 agtagttgcgatacatggtcatgaagtgaagattttcaaacaagagagtccatgatttacatacacatccaaatcgttttaaagattttagaggcaattt 287547  T
Q  311 tgacaagatagtgaaggcatgatcttcaggtatatggttgctaaacttaagatttttggcaccctcagatttctccatctccaaatcac---acaagttt 407  Q
    ||| ||||||| ||||     |||||| | ||||||||  ||||||||||||||| ||||||||||| ||||||||||||| |||||||   |||| |||    
T  287548 tgaaaagatagagaagatcaaatcttctgatatatggtcactaaacttaagatttgtggcaccctcatatttctccatctcaaaatcacacaacaaattt 287647  T
Q  408 tgttcttgtactcttaaatcttaacgggaatgagattgatg 448  Q
    |||||||||||| |||| |||||| | ||||||||||||||    
T  287648 tgttcttgtacttttaactcttaaagagaatgagattgatg 287688  T

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Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 287001 - 287105
Alignment:
Q  20 actagttctacacaaaatatcaataaaactatcatcctcataaaatggaggtggccaatctacttttatcatattctgaaacctctctcctgaaagtaaa 119  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  287001 actagttctactcaaaatatcaataaaactatcatcctcatgaaatggaggtggccaatctacttttatcatattctcaaacctctctcctgaaagtaaa 287100  T
Q  120 tacaa 124  Q
    |||||    
T  287101 tacaa 287105  T

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Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 161 - 402
Target Start/End: Original strand, 2742657 - 2742898
Alignment:
Q  161 gtttaggaggatagaagtatcatcgtaataaaaatgattattaaaaaggaagtagttgcgatacatggtcgtaaaatgaagattttcaaacaagaaagtc 260  Q
    ||||||||||||| |||||||||| |||||| |||||||| || |||  |||||||||||||||||| ||   || |  ||||||||||||||||    |    
T  2742657 gtttaggaggatacaagtatcatcataataagaatgattactagaaataaagtagttgcgatacatgttcaagaagtatagattttcaaacaagaggacc 2742756  T
Q  261 catgatttgcgtacacatccaaatcgttttaaagattttagaggcaattttgacaagatagtgaaggcatgatcttcaggtatatggttgctaaacttaa 360  Q
    |||||||| | ||| ||||||||||| |||||||||||||||||||||||| ||| ||||| || |||| ||||||| | |||||| ||||||| ||| |    
T  2742757 catgatttacatacgcatccaaatcgctttaaagattttagaggcaattttaacaggatagagagggcaagatcttcggatatatgattgctaaccttta 2742856  T
Q  361 gatttttggcaccctcagatttctccatctccaaatcacaca 402  Q
     |||| | |||||| ||  ||||| ||||| ||||| |||||    
T  2742857 catttatagcacccacaattttcttcatcttcaaattacaca 2742898  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 287105 - 287154
Alignment:
Q  165 aggaggatagaagtatcatcgtaataaaaatgattattaaaaaggaagta 214  Q
    |||||||||||||||| || ||||||| ||||||||||||||||||||||    
T  287105 aggaggatagaagtattattgtaataagaatgattattaaaaaggaagta 287154  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 313
Target Start/End: Complemental strand, 29299248 - 29299176
Alignment:
Q  241 gattttcaaacaagaaagtccatgatttgcgtacacatccaaatcgttttaaagattttagaggcaattttga 313  Q
    ||||||||||||||| || |||||||||||| |||||| |||| || || |||||||| |||||||| |||||    
T  29299248 gattttcaaacaagagagaccatgatttgcgaacacattcaaaacgcttaaaagatttaagaggcaactttga 29299176  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 350
Target Start/End: Original strand, 32745713 - 32745848
Alignment:
Q  215 gttgcgatacatggtcgtaaaatgaagattttcaaacaagaaagtccatgatttgcgtacacatccaaatcgttttaaagattttagaggcaattttgac 314  Q
    ||||||| ||||| || | ||||||  ||||||| | |||| || |||||||||||| || ||| |||||||||| |||||||| ||||| | ||||||     
T  32745713 gttgcgaaacatgttcatgaaatgagtattttcagataagagagaccatgatttgcgaacgcattcaaatcgtttaaaagatttaagaggtagttttgat 32745812  T
Q  315 aagatagtgaaggcatgatcttcaggtatatggttg 350  Q
    | ||| | |||||||  ||| |||||||||| ||||    
T  32745813 aggatggagaaggcaatatcatcaggtatatagttg 32745848  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 29123321 - 29123253
Alignment:
Q  245 ttcaaacaagaaagtccatgatttgcgtacacatccaaatcgttttaaagattttagaggcaattttga 313  Q
    |||| |||||| || |||||||||||| ||  || ||| |||||| |||||||| ||||||||||||||    
T  29123321 ttcagacaagagagaccatgatttgcgaacggattcaactcgtttaaaagatttaagaggcaattttga 29123253  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 313
Target Start/End: Complemental strand, 9704443 - 9704362
Alignment:
Q  232 taaaatgaagattttcaaacaagaaagtccatgatttgcgtacacatccaaatcgttttaaagattttagaggcaattttga 313  Q
    |||||||| | |||||||| || |  ||||||||||| || ||||||| |||||||||||||||||| ||||| ||||||||    
T  9704443 taaaatgatggttttcaaataaaagtgtccatgatttacgaacacatctaaatcgttttaaagatttcagaggtaattttga 9704362  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 345
Target Start/End: Complemental strand, 5441603 - 5441499
Alignment:
Q  241 gattttcaaacaagaaagtccatgatttgcgtacacatccaaatcgttttaaagattttagaggcaattttgacaagatagtgaaggcatgatcttcagg 340  Q
    |||||| ||| |||| || ||| ||||||||||| |||||||| || || || ||||| | ||||||||||||||| |||| |||| || |||| | |||    
T  5441603 gatttttaaataagatagaccacgatttgcgtacgcatccaaaacgattcaatgatttcacaggcaattttgacaaaatagagaagacaagatcattagg 5441504  T
Q  341 tatat 345  Q
    |||||    
T  5441503 tatat 5441499  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 345
Target Start/End: Complemental strand, 5450613 - 5450509
Alignment:
Q  241 gattttcaaacaagaaagtccatgatttgcgtacacatccaaatcgttttaaagattttagaggcaattttgacaagatagtgaaggcatgatcttcagg 340  Q
    |||||| ||| |||| || ||| ||||||||||| |||||||| || || || ||||| | ||||||||||||||| |||| |||| || |||| | |||    
T  5450613 gatttttaaataagatagaccacgatttgcgtacgcatccaaaacgattcaatgatttcacaggcaattttgacaaaatagagaagacaagatcattagg 5450514  T
Q  341 tatat 345  Q
    |||||    
T  5450513 tatat 5450509  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 27174371 - 27174423
Alignment:
Q  261 catgatttgcgtacacatccaaatcgttttaaagattttagaggcaattttga 313  Q
    |||||||||||||| ||||||||||| || |||||||| ||||| ||||||||    
T  27174371 catgatttgcgtacgcatccaaatcgcttcaaagatttcagaggtaattttga 27174423  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 298
Target Start/End: Original strand, 42835378 - 42835462
Alignment:
Q  214 agttgcgatacatggtcgtaaaatgaagattttcaaacaagaaagtccatgatttgcgtacacatccaaatcgttttaaagattt 298  Q
    ||||||||||||| ||| | |||| |||||| |||||||| |  | |||||||||| |||| ||||||||||| || ||||||||    
T  42835378 agttgcgatacatagtcatgaaataaagattatcaaacaaaagggaccatgatttgtgtacgcatccaaatcgcttcaaagattt 42835462  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 315
Target Start/End: Complemental strand, 9052437 - 9052383
Alignment:
Q  261 catgatttgcgtacacatccaaatcgttttaaagattttagaggcaattttgaca 315  Q
    |||||||||||||| |||||||||   ||||||||||||| ||| ||||||||||    
T  9052437 catgatttgcgtacgcatccaaatttctttaaagattttacaggtaattttgaca 9052383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 37512080 - 37512027
Alignment:
Q  260 ccatgatttgcgtacacatccaaatcgttttaaagattttagaggcaattttga 313  Q
    ||||||||||| |||| || |||||||||| |||||||| ||||||| ||||||    
T  37512080 ccatgatttgcatacatattcaaatcgtttcaaagatttgagaggcagttttga 37512027  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 315
Target Start/End: Complemental strand, 367993 - 367938
Alignment:
Q  260 ccatgatttgcgtacacatccaaatcgttttaaagattttagaggcaattttgaca 315  Q
    |||||||||||||||||||  ||||||  | |||||||||||||||| ||||||||    
T  367993 ccatgatttgcgtacacatttaaatcgagtcaaagattttagaggcagttttgaca 367938  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 4027113 - 4027056
Alignment:
Q  243 ttttcaaacaagaaagtccatgatttgcgtacacatccaaatcgttttaaagatttta 300  Q
    |||||||| |||| || ||||| |||| ||||||||||||| ||||| ||||||||||    
T  4027113 ttttcaaataagagagaccatggtttgtgtacacatccaaaacgtttcaaagatttta 4027056  T

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