View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6360_low_12 (Length: 438)
Name: NF6360_low_12
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 41323500 - 41323727
Alignment:
| Q |
1 |
ttttatattttattattagtcagtcgaatttacaacactcacacaccaaccaattgcgctagatttcaactgctattatgtaataaaagttacaagtcgt |
100 |
Q |
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| T |
41323500 |
ttttatattttattattagtcagtcgaatttacaacactcacacaccaaccaattgcgctagatctcaactgctattatgtaataaaagttacaattcgt |
41323599 |
T |
|
| Q |
101 |
tactagttaccttcaagtgtctccaaacaggatgtatataaaagtggttaaccccccaaacttgcctatcgacatatccaacagcgttacatgcagggcc |
200 |
Q |
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| T |
41323600 |
tactagttaccttcaagtgtctccaaacaggatgtatataaaagtggttaaccccccaaacttgcctatcgacatatccaacagcgttacatgcagggcc |
41323699 |
T |
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| Q |
201 |
tctgtgtcctctcatcccacatatcacc |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
41323700 |
tctgtgtcctctcatcccacatatcacc |
41323727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 270 - 435
Target Start/End: Original strand, 41323769 - 41323934
Alignment:
| Q |
270 |
cttcaacgaacaatttagacattagagagtgaatataccgtgtatctttttggttcatcaccgttagtatgatctacgaaactccaatcaggaacgtaga |
369 |
Q |
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| T |
41323769 |
cttcaactaacaatttagacattggagagtgaatataccgtgtatctttttggttcgtcaccgttagtatgatctacgaaactccaatcaggaacgtaga |
41323868 |
T |
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| Q |
370 |
gggtgaaagttgtgatcatgtaaatgagaaatgccaaaaagcctccaaacctagctcatgtatatt |
435 |
Q |
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| T |
41323869 |
gggtgaaagttgtgatcatgtaaatgagaaatgccaaaaagcctccaaacctagctcatgtatatt |
41323934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 305 - 422
Target Start/End: Original strand, 41309186 - 41309303
Alignment:
| Q |
305 |
taccgtgtatctttttggttcatcaccgttagtatgatctacgaaactccaatcaggaacgtagagggtgaaagttgtgatcatgtaaatgagaaatgcc |
404 |
Q |
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|||||||||||| |||||||||||| |||| ||||||||| |||||||||| |||||| || | | || ||||||||||||||||||||||||||| |
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| T |
41309186 |
taccgtgtatctctttggttcatcattgttaacatgatctacaaaactccaattaggaacatacaaagcaaaggttgtgatcatgtaaatgagaaatgcc |
41309285 |
T |
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| Q |
405 |
aaaaagcctccaaaccta |
422 |
Q |
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| T |
41309286 |
atgaagcctccaaaccta |
41309303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 119 - 228
Target Start/End: Original strand, 41308995 - 41309104
Alignment:
| Q |
119 |
gtctccaaacaggatgtatataaaagtggttaaccccccaaacttgcctatcgacatatccaacagcgttacatgcagggcctctgtgtcctctcatccc |
218 |
Q |
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||||||||||||| || ||||| || |||||||||||| ||| ||||| |||||||||||||||||||||||||| || ||| ||||||||||| |
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| T |
41308995 |
gtctccaaacaggttgagaataaagatgattaaccccccaagtttgtctatcaacatatccaacagcgttacatgcaggaccaaggtgccctctcatccc |
41309094 |
T |
|
| Q |
219 |
acatatcacc |
228 |
Q |
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|||||||||| |
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| T |
41309095 |
acatatcacc |
41309104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 27658015 - 27657940
Alignment:
| Q |
148 |
ttaaccccccaaacttgcctatcgacatatccaacagcgttacatgcagggcctctgtgtcctctcatcccacata |
223 |
Q |
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||||||||||| | ||| ||||| ||||| |||||||||||||||||||| ||| ||||||||| |||||||||| |
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| T |
27658015 |
ttaaccccccacatttgtctatccacatacccaacagcgttacatgcaggacctaagtgtcctctaatcccacata |
27657940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 348 - 422
Target Start/End: Complemental strand, 27657822 - 27657748
Alignment:
| Q |
348 |
aaactccaatcaggaacgtagagggtgaaagttgtgatcatgtaaatgagaaatgccaaaaagcctccaaaccta |
422 |
Q |
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||||||||||| |||||||||||| ||||||| |||| ||||||||| | |||||||| ||| ||||||| |||| |
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| T |
27657822 |
aaactccaatctggaacgtagaggctgaaagtagtgaccatgtaaataacaaatgccacaaaccctccaagccta |
27657748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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