View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6360_low_13 (Length: 434)
Name: NF6360_low_13
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 47494324 - 47494011
Alignment:
| Q |
19 |
caattgcatgtctttctctggctgcaaagatggaggagtgtaatgtgccagggctatcacagtttcaattggaagatgattattatgtctttgaaggaaa |
118 |
Q |
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| T |
47494324 |
caattgcatgtctttctctggctgcaaagatggaggagtgtaatgtgccagagctatcacagtttcaattggaagatgattat---gtctttgaaggaaa |
47494228 |
T |
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| Q |
119 |
agtgattcaaaaaatggagctttttgtacttagctcattggattggaacatgggtatcatcactcccttttcattcctttcttacttcatcaaaaagttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47494227 |
agtgattcaaaaaatggagctttttgtacttagctcattggattggaacatgggtatcatcactcccttttcattcctttcttacttcatcaaaaagttc |
47494128 |
T |
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| Q |
219 |
agcaatgaatcaccaagtcctattgtttccaacacaatgcatcctattttcactgtagtaatggaaggtgaatcaatcatgaactctctttttgagttta |
318 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47494127 |
agcaatgaatcaccaagtcctattatttccaacacaatgcatcctattttcactgtagtaatggaaggtgaatcaatcatgaactctctttttgagttta |
47494028 |
T |
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| Q |
319 |
aaagattatttacacta |
335 |
Q |
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||||||||||||||||| |
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| T |
47494027 |
aaagattatttacacta |
47494011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 334 - 427
Target Start/End: Complemental strand, 47493989 - 47493896
Alignment:
| Q |
334 |
taatgattaaactctaatattttttaataatcaaatgattatgttatattgatactagtagcatctaaatcttttgcattgatgatgatgatgt |
427 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47493989 |
taatgattaaactcaaatattttttaataatcaaatgattatgttatattgatactagtagcatctaaatcttttgcattgatgatgacgatgt |
47493896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 24221431 - 24221335
Alignment:
| Q |
115 |
gaaaagtgattcaaaaaatggagctttttgtacttagctcattggattggaacatgggtatcatcactcccttttcattcctttcttacttcatcaa |
211 |
Q |
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||||||| |||||||||||||||||||||| |||||| ||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
24221431 |
gaaaagtagttcaaaaaatggagctttttgttcttagcagattagattggaacatgagtattatcactcccttttcattcctttcttacttcatcaa |
24221335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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