View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6360_low_15 (Length: 415)
Name: NF6360_low_15
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_low_15 |
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| [»] scaffold0115 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 6 - 409
Target Start/End: Complemental strand, 31378742 - 31378338
Alignment:
| Q |
6 |
ataaatatgactaatcaacaatgtcttacaaatcaatttaggatgttgattattattttcttaataatatttgagtaaggtac-tcacgtactcctacat |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
31378742 |
ataaatatgactaatcaacaatgtcttacaaatcaatttaggatgttgattattattttcttaataatatttgagtaaggtacatcacatactcctacat |
31378643 |
T |
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| Q |
105 |
catcaattattgaactaggatattgattattattttcttaataatgttttattcatataccttgtgatggattgctacaagtagatttgaatggaaaaat |
204 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
31378642 |
catcaattattgagctaggatattgattattattttcttaataatgttttattcatataccttgtgatggatagctacaagtagatttgaatggaaaagt |
31378543 |
T |
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| Q |
205 |
ttgacggtcaaggactttgtaattctaaattcatggaattataaaatgtttttaaaaattgataaagtatgatttggatattgcatggtattctcttatt |
304 |
Q |
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| T |
31378542 |
ttcacggtcaaggactttgtaattctaaattcatggaattataaaatgtttttaaaaattgataaagtatgatttggatattgcatggtattctcttatt |
31378443 |
T |
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| Q |
305 |
aaaaaataatccaaaaagttggataaaattcgtttaatggttgtaatatgcaattaactactgaaaagataacacaattcaaccccctctatttttctca |
404 |
Q |
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| T |
31378442 |
aaaaaatgatccaaaaagttggataaaatttgtttaatggttgtaatatgcgattaactactgaaaaaataacacaattcaaccccctctgtttttctca |
31378343 |
T |
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| Q |
405 |
ccttc |
409 |
Q |
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| T |
31378342 |
ccttc |
31378338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 162 - 269
Target Start/End: Complemental strand, 38548 - 38441
Alignment:
| Q |
162 |
taccttgtgatggattgctacaagtagatttgaatggaaaaatttgacggtcaaggactttgtaattctaaattcatggaattataaaatgtttttaaaa |
261 |
Q |
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| T |
38548 |
taccttatgatagatagctacaggtagatttgaatggacaagtttgttggtcaaggactttgtaattctaaattcatgaaattataaaatgtttttaaaa |
38449 |
T |
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| Q |
262 |
attgataa |
269 |
Q |
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|||||||| |
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| T |
38448 |
attgataa |
38441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 162 - 269
Target Start/End: Original strand, 2531417 - 2531524
Alignment:
| Q |
162 |
taccttgtgatggattgctacaagtagatttgaatggaaaaatttgacggtcaaggactttgtaattctaaattcatggaattataaaatgtttttaaaa |
261 |
Q |
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| T |
2531417 |
taccttatgatagatagctacgggtagatttgaacggacaagtttgtcggtcaaggactttgtaattctaaattcatggaattataaaatgtttttaaaa |
2531516 |
T |
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| Q |
262 |
attgataa |
269 |
Q |
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|||||||| |
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| T |
2531517 |
attgataa |
2531524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 2531664 - 2531728
Alignment:
| Q |
128 |
tgattattattttcttaataatgttttattcatataccttgtgatggattgctacaagtagattt |
192 |
Q |
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| T |
2531664 |
tgattattattttcttaataatgtttctttcatataccttgtgatggatagctacaagtagattt |
2531728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 23922525 - 23922469
Alignment:
| Q |
75 |
tttgagtaaggtac-tcacgtactcctacatcatcaattattgaactaggatattga |
130 |
Q |
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| T |
23922525 |
tttgagtaaggtacatcacatactcctgcatcatcaattattgagttaggatattga |
23922469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 409
Target Start/End: Complemental strand, 10917549 - 10917515
Alignment:
| Q |
375 |
aacacaattcaaccccctctatttttctcaccttc |
409 |
Q |
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| T |
10917549 |
aacacaattcaaccccctgtatttttctcaccttc |
10917515 |
T |
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