View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6360_low_18 (Length: 363)

Name: NF6360_low_18
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6360_low_18
NF6360_low_18
[»] chr4 (3 HSPs)
chr4 (1-355)||(49351670-49352024)
chr4 (1-355)||(49340306-49340660)
chr4 (260-350)||(19030339-19030429)
[»] chr5 (1 HSPs)
chr5 (1-355)||(32784251-32784605)
[»] chr7 (9 HSPs)
chr7 (1-353)||(29743034-29743383)
chr7 (1-353)||(29602874-29603223)
chr7 (1-353)||(29750071-29750420)
chr7 (228-353)||(35958118-35958243)
chr7 (240-353)||(35939460-35939573)
chr7 (240-290)||(35982204-35982254)
chr7 (240-290)||(36003616-36003666)
chr7 (147-197)||(36273212-36273262)
chr7 (240-353)||(36221440-36221553)
[»] chr6 (1 HSPs)
chr6 (1-140)||(13441294-13441433)
[»] chr1 (1 HSPs)
chr1 (82-342)||(35157291-35157545)


Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 49351670 - 49352024
Alignment:
Q  1 cttgtttatcgctttcaaatggcacaccaaatcaaacacatcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatg 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49351670 cttgtttatcgctttcaaatggcacaccaaatcaaacatatcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatg 49351769  T
Q  101 atagtgataatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcattga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  49351770 atagtgataatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattgattctgatgtgataggaagggaacatgataaacaaaaaatcattga 49351869  T
Q  201 tatgttattgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49351870 tatgttattgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgttt 49351969  T
Q  301 aatgagaagagtttagatgagacttttccattgaagatgtgggtgtgtgtctctg 355  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  49351970 aatgataagagtttagatgagacttttccattgaagatgtgggtgtgtgtctctg 49352024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 49340306 - 49340660
Alignment:
Q  1 cttgtttatcgctttcaaatggcacaccaaatcaaacacatcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatg 100  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  49340306 cttgtttatcgctttcaaatggcacatcaaatcaaacatatcaaagaaagatttgataagtttgctgctgataggcttaagtttggccttcaaatcaatg 49340405  T
Q  101 atagtgataatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcattga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||| |    
T  49340406 atagtgataatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattgattctgatgtgataggaagaaaacatgataaacaaaaaatcattaa 49340505  T
Q  201 tatgttattgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgttt 300  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||  ||||||    
T  49340506 tctgttattgcaagatagtggtgatagtaatagtctctctgttattcctattgttggaattggaggattaggaaaaactacacttgcaaaggtcgtgttt 49340605  T
Q  301 aatgagaagagtttagatgagacttttccattgaagatgtgggtgtgtgtctctg 355  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  49340606 aatgataagagtttagatgagacttttccattgaagatgtgggtgtgtgtctctg 49340660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 260 - 350
Target Start/End: Original strand, 19030339 - 19030429
Alignment:
Q  260 ttggaggattaggaaagactacacttgcaaaggcagtgtttaatgagaagagtttagatgagacttttccattgaagatgtgggtgtgtgt 350  Q
    |||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  19030339 ttggaggattaggaaaaactacacttgcaaaggcagtgtttaatgttaagagtttagatgagacttttccattgaagatgtgggtgtgtgt 19030429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 32784605 - 32784251
Alignment:
Q  1 cttgtttatcgctttcaaatggcacaccaaatcaaacacatcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatg 100  Q
    |||||||| ||| || ||||||  || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32784605 cttgtttaccgccttaaaatggtgcatcaaatcaaacatatcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatg 32784506  T
Q  101 atagtgataatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcattga 200  Q
    |||||||||| |||||||||||||| || |||||||||||||||||||||| || ||||||||||||||||||  ||||||||||||||||||||||| |    
T  32784505 atagtgataaccgtgttgtaaaaagacgtgaattgacacattcatatgtgaatgattctgatgtgataggaagaaaacatgataaacaaaaaatcattaa 32784406  T
Q  201 tatgttattgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgttt 300  Q
    |  |||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  32784405 tcagttattgctagatagtggtgatagtaatagtctctctgttattcctattgttggaattggaggattaggaaaaactacactttcaaaggcagtgttt 32784306  T
Q  301 aatgagaagagtttagatgagacttttccattgaagatgtgggtgtgtgtctctg 355  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  32784305 aatgataagagtttagatgagactttttcattgaagatgtgggtttgtgtctctg 32784251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 171; Significance: 9e-92; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 29743034 - 29743383
Alignment:
Q  1 cttgtttatcgctttcaaatggcacaccaaatcaaacacatcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatg 100  Q
    |||||||||||| || |||||||||| ||||||||||| || ||  ||| |||  ||||||||||||||||| ||| ||| |||||||||| ||||||||    
T  29743034 cttgtttatcgccttaaaatggcacatcaaatcaaacatattaataagaaattgaataaggttgctgctgatcggcataactttggccttcgaatcaatg 29743133  T
Q  101 atagtgataatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcattga 200  Q
    |||||||||||| ||||||||||||||| || ||||| |||||  |||| |||| |||||||||||||||||| ||| | |||||||| ||||| |||||    
T  29743134 atagtgataatcatgttgtaaaaaggcgtgagttgactcattcgcatgtaattgattctgatgtgataggaagagaaaacgataaacacaaaattattga 29743233  T
Q  201 tatgttattgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgttt 300  Q
    | | |||||||||||||   |||||  ||| | |||||||||||||||| |||||||||||||||| || ||||||||||| ||||||||| |||||||     
T  29743234 tctcttattgcaagata---gtgatcataaaattctctctgttattcctattgttggaattggaggcttgggaaagactacgcttgcaaagacagtgttc 29743330  T
Q  301 aatgagaagagtttagatgagacttttccattgaagatgtgggtgtgtgtctc 353  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||    
T  29743331 aatgataagagtttagacgagacttttccattaaagatgtgggtgtgtgtctc 29743383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 29603223 - 29602874
Alignment:
Q  1 cttgtttatcgctttcaaatggcacaccaaatcaaacacatcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatg 100  Q
    |||||||||||| || |||||||||| ||||||||||| || ||  |||||||  |||||   ||||||| ||||| ||| |||||||||||||||||||    
T  29603223 cttgtttatcgccttaaaatggcacatcaaatcaaacatattaataagagattgaataagaacgctgctgctaggcataattttggccttcaaatcaatg 29603124  T
Q  101 atagtgataatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcattga 200  Q
    |||| ||||||| ||||||||||||||| || ||||| |||||  ||||  ||| |||||||||||||||||||||  | ||||| |||||||| |||||    
T  29603123 atagcgataatcatgttgtaaaaaggcgggagttgactcattcgcatgtagttgattctgatgtgataggaagggattacgataagcaaaaaattattga 29603024  T
Q  201 tatgttattgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgttt 300  Q
    | | |||||||||||||| ||| |   ||| |||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| | |||||     
T  29603023 tctcttattgcaagatagtggtca---taaaagtctctctgttattcctattgttggaattggaggcttgggaaagactacacttgcaaagacggtgttc 29602927  T
Q  301 aatgagaagagtttagatgagacttttccattgaagatgtgggtgtgtgtctc 353  Q
    ||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  29602926 aatgataagagtttagacgagactttcccattaaagatgtgggtgtgtgtctc 29602874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 29750071 - 29750420
Alignment:
Q  1 cttgtttatcgctttcaaatggcacaccaaatcaaacacatcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatg 100  Q
    |||||||||||| || |||||||||| |||||||||||  | ||  |||||||  |||||   ||||||| ||||| ||| |||||||||||||||||||    
T  29750071 cttgtttatcgccttaaaatggcacatcaaatcaaacatgttaataagagattgaataagaacgctgctgctaggcataattttggccttcaaatcaatg 29750170  T
Q  101 atagtgataatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcattga 200  Q
    |||| ||||||| ||||||||||||||| || ||||| |||||  ||||  ||| |||||||||||||||||||||  | ||||| |||||||| |||||    
T  29750171 atagcgataatcatgttgtaaaaaggcgggagttgactcattcgcatgtagttgattctgatgtgataggaagggattacgataagcaaaaaattattga 29750270  T
Q  201 tatgttattgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgttt 300  Q
    | | |||||||||||||| ||| |||   | |||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| | |||||     
T  29750271 tctcttattgcaagatagtggtcata---aaagtctctctgttattcctattgttggaattggaggcttgggaaagactacacttgcaaagacggtgttc 29750367  T
Q  301 aatgagaagagtttagatgagacttttccattgaagatgtgggtgtgtgtctc 353  Q
    ||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||    
T  29750368 aatgataagagtttagacgagacatttccattaaagatgtgggtgtgtgtctc 29750420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 353
Target Start/End: Complemental strand, 35958243 - 35958118
Alignment:
Q  228 taatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgtttaatgagaagagtttagatgagactttt 327  Q
    ||||||||||| ||| |||||  | || ||||||||||| || |||||||| |||||||||||| | ||||| ||||| |||||  | ||| | ||||||    
T  35958243 taatagtctctgtgtcattccaatagtgggaattggaggtttgggaaagacaacacttgcaaagtcggtgttcaatgataagaggatggatca-actttt 35958145  T
Q  328 cca-ttgaagatgtgggtgtgtgtctc 353  Q
    ||| |||||||||||||||||| ||||    
T  35958144 ccagttgaagatgtgggtgtgtatctc 35958118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 35939573 - 35939460
Alignment:
Q  240 tgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgtttaatgagaagagtttagatgagacttttcc-attgaagat 338  Q
    |||||||||  |||| ||||||||||||||||| ||||| ||||||||||||   ||||| ||||| |||||  |  || | |||||||| |||||||||    
T  35939573 tgttattcccattgtgggaattggaggattagggaagaccacacttgcaaagttggtgttcaatgataagagggtgaatca-acttttccaattgaagat 35939475  T
Q  339 gtgggtgtgtgtctc 353  Q
    |||| ||||||||||    
T  35939474 gtggttgtgtgtctc 35939460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 35982254 - 35982204
Alignment:
Q  240 tgttattcctgttgttggaattggaggattaggaaagactacacttgcaaa 290  Q
    |||||||||  |||| ||||||||||| || ||||||||||||||||||||    
T  35982254 tgttattcccattgtgggaattggaggtttgggaaagactacacttgcaaa 35982204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 36003666 - 36003616
Alignment:
Q  240 tgttattcctgttgttggaattggaggattaggaaagactacacttgcaaa 290  Q
    |||||||||  |||| ||||||||||| || ||||||||||||||||||||    
T  36003666 tgttattcccattgtgggaattggaggtttgggaaagactacacttgcaaa 36003616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 36273212 - 36273262
Alignment:
Q  147 tgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcat 197  Q
    |||||||  ||| ||||||||||||||||||||||||||| |||| |||||    
T  36273212 tgtgattaattcagatgtgataggaagggaacatgataaagaaaagatcat 36273262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 353
Target Start/End: Original strand, 36221440 - 36221553
Alignment:
Q  240 tgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgtttaatgagaagagtttagatgagacttttccattgaagatg 339  Q
    |||||||||  | ||||||||||| || || || ||||| |||||||||| |   ||||| ||||| |||||  ||||||| | ||| | |||||||||     
T  36221440 tgttattcccatagttggaattggtggcttggggaagaccacacttgcaaggttggtgttcaatgataagaggatagatgatattttccaattgaagatt 36221539  T
Q  340 tgggtgtgtgtctc 353  Q
    ||||||||||||||    
T  36221540 tgggtgtgtgtctc 36221553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 13441433 - 13441294
Alignment:
Q  1 cttgtttatcgctttcaaatggcacaccaaatcaaacacatcaaagagagatttgataaggttgctgctgataggcttaagtttggccttcaaatcaatg 100  Q
    |||||||||||| || |||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| | ||||||||  |||||||||||||    
T  13441433 cttgtttatcgccttaaaatggcacatcaaattaaacatatcaaagaaagatttgataaggttgctgctgatagacataagtttgttcttcaaatcaatg 13441334  T
Q  101 atagtgataatcgtgttgtaaaaaggcgcgaattgacaca 140  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  13441333 atagtgataaccgtgttgtaaaaaggcgtgaattgacaca 13441294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 342
Target Start/End: Original strand, 35157291 - 35157545
Alignment:
Q  82 tttggccttcaaatcaatgatagtgataatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattggttctgatgtgataggaagggaacatg 181  Q
    ||||||||||| ||||| || |||||| ||||||||||  |||| || |||   || |||||  |||| | || |||||||||||||||||||||||| |    
T  35157291 tttggccttcacatcaaagagagtgatgatcgtgttgtgcaaagacgggaa---actcattctcatgtaaatgattctgatgtgataggaagggaacaag 35157387  T
Q  182 ataaacaaaaaatcattgatatgttattgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactac 281  Q
    ||||||| |||||  | ||  | |||||  | ||||| | |||||  |||   || |||||| || || |||| ||| |||||||  | |||||||||||    
T  35157388 ataaacagaaaattgtagaactcttattcgacgatagtgatgataaaaat---ctatctgttgttgctattgtgggacttggaggtatgggaaagactac 35157484  T
Q  282 acttgcaaaggcagtgtttaatgagaagagtttagatgagacttttccattgaagatgtgg 342  Q
    ||||||||| |  ||||||||||| |||||| ||| |||  |||||||||| |||||||||    
T  35157485 acttgcaaaagttgtgtttaatgataagagtgtagttgactcttttccattaaagatgtgg 35157545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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