View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6360_low_2 (Length: 838)
Name: NF6360_low_2
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 492 - 824
Target Start/End: Original strand, 31896242 - 31896579
Alignment:
| Q |
492 |
tacccagattgcaatcttttgcatttattcaagtcaagtagatacaactgtaaacatagtttgtcttggttacacactactacactcaagcatctaaaaa |
591 |
Q |
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| T |
31896242 |
tacccagattgcaatcttttgcatttattcaagtcaagtagatacaactgtaaacatagtttgtcttggttacacactactacactcaagcatctaaaaa |
31896341 |
T |
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| Q |
592 |
-----gaacttaatgaacacgttgaaagtggtaattgtgaaagggtccattctaattatacatacaagatcatataacataactgagcaaaagctcctat |
686 |
Q |
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| T |
31896342 |
ttatagaacttaatgaacatgttgaaagtggtaattgtgaaagggtccattctaattatacatacaagatcatataacataactgagcaaaagctcctat |
31896441 |
T |
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| Q |
687 |
tcggtcacatgtatcttcactggaaactcctttttaacccactctagataacctcctcccatgttgtacacatccttaaacccctgccacacaacaaatt |
786 |
Q |
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| T |
31896442 |
tcggtcacatgtatcttcactggaaactcctttttaacccactctagataacctcctcccatgttgtacacatccttaaacccctgccacacaacaaatt |
31896541 |
T |
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| Q |
787 |
gagaatgcagaatgaatagaaattgaggagttaagatt |
824 |
Q |
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| T |
31896542 |
gagaatgcagaatgtatagaaattgaggagttaagatt |
31896579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 261 - 493
Target Start/End: Original strand, 31895972 - 31896204
Alignment:
| Q |
261 |
tgtggtcggagataaatctaatggtgaaagattattcttgcgtttcgttaaagcatgattggtaatgaaaaaatattgtcttattgaaaaacatttagac |
360 |
Q |
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| T |
31895972 |
tgtggttggagataaatctaatgatgaaagattattcttgcgtttcgttaaagcacgattggtaatgaaaaaacattatcttattgaaaaacatttagac |
31896071 |
T |
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| Q |
361 |
atgtcaaaattaaatttatatctctaaaatgaatttcgacactttcaaaagtggaactagacatattggtgagtagaattaaaagtacatcttgaaaagt |
460 |
Q |
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| T |
31896072 |
atgttaaaattaaatttatatctctaaaatgaatttcgactcttccaaaagtgtaactagacatattggtgagtagaattaaaagtacatcttgaaaagt |
31896171 |
T |
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| Q |
461 |
tttttaaggcaatagtagtagctaggtcaagta |
493 |
Q |
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| T |
31896172 |
tttttaaggcaatagtagtagctaggtcaagta |
31896204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 31895784 - 31895868
Alignment:
| Q |
12 |
agtgagatgaatgtggaatgatttatatgtttgcatcaataaccataaaaatgagatgaatgataaattttagttagaagtcatg |
96 |
Q |
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| T |
31895784 |
agtgagatgaatgtgaaatgatttatatgtttgcatcaataaccataaaaatgagatgaatgataaattttagttagaagtcatg |
31895868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 261 - 325
Target Start/End: Complemental strand, 7252380 - 7252316
Alignment:
| Q |
261 |
tgtggtcggagataaatctaatggtgaaagattattcttgcgtttcgttaaagcatgattggtaa |
325 |
Q |
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| T |
7252380 |
tgtggtcggagataaatctaataatgaagaattattcttgcgtttcgttaaaccatgattcgtaa |
7252316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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