View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6360_low_20 (Length: 344)

Name: NF6360_low_20
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6360_low_20
NF6360_low_20
[»] chr3 (3 HSPs)
chr3 (1-211)||(44652628-44652841)
chr3 (226-329)||(44652424-44652528)
chr3 (207-235)||(44652527-44652555)
[»] chr4 (3 HSPs)
chr4 (99-170)||(4848606-4848677)
chr4 (99-170)||(5199028-5199099)
chr4 (99-153)||(4151360-4151414)
[»] chr6 (1 HSPs)
chr6 (141-209)||(2721838-2721907)
[»] chr5 (1 HSPs)
chr5 (111-153)||(21256796-21256838)
[»] chr1 (1 HSPs)
chr1 (99-148)||(32900369-32900418)
[»] chr7 (1 HSPs)
chr7 (117-154)||(24118343-24118380)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 44652841 - 44652628
Alignment:
Q  1 ctaaattaattagtggttaatttgttgtgga---agaaacaaattaaattcaatataaaattcaattaatacatggttatgaaatcatggttataaaatt 97  Q
    |||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44652841 ctaaattaattagtggttaatttgttgtggatcaagaaacaaagtaaattcaatataaaattcaattaatacatggttatgaaatcatggttataaaatt 44652742  T
Q  98 caattatagttatgaaatcatgaagaaacaattagaaattaaattattatacattacatgatagtataaataaattaataaaatttatacatggttgcga 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44652741 caattatagttatgaaatcatgaagaaacaattagaaattaaattattatacattacatgatagtataaataaattaataaaatttatacatggttgcga 44652642  T
Q  198 ttaactcataccgc 211  Q
    ||||||||||||||    
T  44652641 ttaactcataccgc 44652628  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 226 - 329
Target Start/End: Complemental strand, 44652528 - 44652424
Alignment:
Q  226 taatatcatacataataaggtcacttgcaagaaacaagaagggatgaccaaaatgaagaaaacccaaagtgtgccttattcat-attacccttactacaa 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||| |    
T  44652528 taatatcatacataataaggtcacttgcaagaaacaagaagggatgaccaaaatgaagaaaatccaaagtgtgccttgttcataattacccttgctacga 44652429  T
Q  325 tcttt 329  Q
    |||||    
T  44652428 tcttt 44652424  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 44652555 - 44652527
Alignment:
Q  207 accgctatttaaaagattgtaatatcata 235  Q
    |||||||||||||||||||||||||||||    
T  44652555 accgctatttaaaagattgtaatatcata 44652527  T

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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 4848606 - 4848677
Alignment:
Q  99 aattatagttatgaaatcatgaagaaacaattagaaattaaattattatacattacatgatagtataaataa 170  Q
    |||||| |||||||||| ||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  4848606 aattattgttatgaaattatgaagaaacaatgagaaattaagttattatacattatatgatagtataaataa 4848677  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 5199099 - 5199028
Alignment:
Q  99 aattatagttatgaaatcatgaagaaacaattagaaattaaattattatacattacatgatagtataaataa 170  Q
    ||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||| |||||| |||||||||    
T  5199099 aattatagtaatgaaattatgaagaaacaatgagaaattaagttattatacattatatgataatataaataa 5199028  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 4151360 - 4151414
Alignment:
Q  99 aattatagttatgaaatcatgaagaaacaattagaaattaaattattatacatta 153  Q
    ||||| ||||||||||| ||||||||||||  |||||||  ||||||||||||||    
T  4151360 aattagagttatgaaattatgaagaaacaacgagaaatttgattattatacatta 4151414  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 2721838 - 2721907
Alignment:
Q  141 ttattatacattacatgatagtataaataa-attaataaaatttatacatggttgcgattaactcatacc 209  Q
    ||||||||||||| ||||||||||||||||  ||||||| |||||| || ||||| ||||||||||||||    
T  2721838 ttattatacattatatgatagtataaataattttaataatatttatgcaaggttgtgattaactcatacc 2721907  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 21256838 - 21256796
Alignment:
Q  111 gaaatcatgaagaaacaattagaaattaaattattatacatta 153  Q
    ||||||||||||||||||| ||||||||| |||||||||||||    
T  21256838 gaaatcatgaagaaacaataagaaattaagttattatacatta 21256796  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 32900369 - 32900418
Alignment:
Q  99 aattatagttatgaaatcatgaagaaacaattagaaattaaattattata 148  Q
    |||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  32900369 aattgtagttatgaaattatgaagaaacaatgagaaattaagttattata 32900418  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 24118343 - 24118380
Alignment:
Q  117 atgaagaaacaattagaaattaaattattatacattac 154  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  24118343 atgaagaaacaatgagaaattaagttattatacattac 24118380  T

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