View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6360_low_23 (Length: 330)
Name: NF6360_low_23
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 509952 - 510252
Alignment:
| Q |
14 |
agaggatttgcgatgtctctctgtagtgagaagacaagagagaaatcaaggttgatctgaatgaacggaattgaaagccgtcgagaacattgatcgattt |
113 |
Q |
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| T |
509952 |
agaggatttgcgatgtctccctgtagtgagaagacaagagagaaatcaaggttgatctgaatgaacgggattgaaagccgtcgagaacattgatcgattt |
510051 |
T |
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| Q |
114 |
agaaagtgaaagtggtgatgaaatggaaccggtgattgggaccgaaagccaagtagcagtagctgagaaggagtggtggaggctggagagtgatctcatg |
213 |
Q |
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| T |
510052 |
agaaagtgaaagtggtgatgaaatggaaccggtgattgggaccgaaagccaagtagcagtagctgagaaggagtggtggaggccggagagtgatctcatg |
510151 |
T |
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| Q |
214 |
ctacggcggatgagaatttgggatgacgccatggtgattggag---atagtagggttttagagagtcaagggttttgggaagcttattgaaatgaaacta |
310 |
Q |
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| T |
510152 |
ctacggcggatgagaatttgcgatgacgccatggtgattggagataatagtagggttttagagagtttagggttttgggaagcttattgaaatgaaacta |
510251 |
T |
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| Q |
311 |
t |
311 |
Q |
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| T |
510252 |
t |
510252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 499313 - 499519
Alignment:
| Q |
25 |
gatgtctctctgtagtgagaagacaagagagaaatcaaggttgatctgaatgaacggaattgaaagccgtcgagaacattgatcgatttagaaagtgaaa |
124 |
Q |
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| T |
499313 |
gatgtctctccgtagcgagaagacaagagagaaatcgaggttgatctgaatgaacgggattgaatgccgtcgactacgtttggggatttcgaaagtgaaa |
499412 |
T |
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| Q |
125 |
gtggtgatgaaatggaaccggtgattgggaccgaaagccaagtagcagtagctgagaaggagtggtggaggctggagagtgatctcatgctacggcggat |
224 |
Q |
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| T |
499413 |
aatgtgatgaaatagaaccggtaattgggaccgaaagcgaagtcgcagtagctgagaaggagtggtggatgccggagagtgatctcaggctacggcggag |
499512 |
T |
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| Q |
225 |
gagaatt |
231 |
Q |
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| T |
499513 |
gagaatt |
499519 |
T |
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